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DNA-based Polymerase Chain Reaction for Detecting FUS-CREB3L2 in Low-grade Fibromyxoid Sarcoma Using Formalin-fixed, Paraffin-embedded Tissue Specimens

Matsuyama, Atsuji MD*; Hisaoka, Masanori MD*; Shimajiri, Shohei MD; Hashimoto, Hiroshi MD*

Diagnostic Molecular Pathology: December 2008 - Volume 17 - Issue 4 - pp 237-240
doi: 10.1097/PDM.0b013e318166d205
Original Articles
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Detection of the tumor-specific fusion gene, FUS-CREB3L2, is useful in the diagnosis of low-grade fibromyxoid sarcoma (LGFMS), especially by reverse transcription (RT)-polymerase chain reaction (PCR) using formalin-fixed, paraffin-embedded (FFPE) tumor tissues. Because FUS and CREB3L2 gene segments with their break points within exons are fused without interposed introns in many LGFMSs, DNA-based PCR may also be applicable to detect the FUS-CREB3L2 fusion gene using FFPE specimens. In this study, DNA and RNA were extracted from FFPE specimens of 16 and 19 LGFMSs, respectively, and PCR and RT-PCR were performed using primers that specifically amplify most of the junctional regions of the FUS-CREB3L2 fusion gene. RT-PCR analysis revealed FUS-CREB3L2 fusion transcripts in 16 of the 19 (84%) LGFMSs. In 14 informative examples, including 11 with detectable fusion transcripts by RT-PCR, DNA-based PCR amplified the FUS-CREB3L2 fusion gene in 9 (64%) examples. Nucleotide sequence analysis confirmed that PCR products were identical to the respective RT-PCR products in 8 cases. Although the sensitivity was not as high as RT-PCR, DNA-based PCR can be used as an alternative molecular approach for detecting the FUS-CREB3L2 fusion gene.

Departments of *Pathology and Oncology

Pathology and Cell Biology, School of Medicine, University of Occupational and Environmental Health, Kitakyushu, Japan

Supported by a Grant-in-Aid for Scientific Research (B) (no. 18790261) 2006 from the Japan Society of the Promotion of Science.

Reprints: Hiroshi Hashimoto, MD, Department of Pathology and Oncology, School of Medicine, University of Occupational and Environmental Health, 1-1 Iseigaoka, Yahatanishi-ku, Kitakyushu 807-8555, Japan (e-mail: hiroshi@med.uoeh-u.ac.jp).

© 2008 Lippincott Williams & Wilkins, Inc.