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Original Articles: Gastroenterology

Human Leukocyte Antigen DQ2.2 and Celiac Disease

Mubarak, Amani*; Spierings, Eric; Wolters, Victorien*; van Hoogstraten, Ingrid; Kneepkens, C.M. Frank§; Houwen, Roderick*

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Journal of Pediatric Gastroenterology and Nutrition: April 2013 - Volume 56 - Issue 4 - p 428-430
doi: 10.1097/MPG.0b013e31827913f9
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Celiac disease (CD) has a strong genetic component mainly related to human leukocyte antigen (HLA) class II genes (1). In fact, earlier studies indicate that CD can only occur in the context of 2 specific HLA molecules: HLA-DQ2.5 and HLA-DQ8 (1–5). HLA-DQ is an αβ-heterodimer, of which the α- and β-chains are encoded by the HLA-DQA1 and HLA-DQB1 genes, respectively. HLA-DQ2.5 is either expressed in cis (encoded by HLA-DR3-DQA1*05:01, -DQB1*02:01) or trans configuration, encoded by HLA-DR11-DQA1*05:05, -DQB1*03:01 (HLA-DQ7.5), and HLA-DR7-DQA1*02:01, -DQB1*02:02 (HLA-DQ2.2). In the latter case, the α-chain from the HLA-DQ7.5 (DQA1*05:05) and the β-chain from the HLA-DQ2.2 (DQB1*02:02) combine together to form HLA-DQA1*05:05, -DQB1*02:02, which is molecularly highly similar to HLA-DQA1*05:01, -DQB1*02:01 and therefore also called HLA-DQ2.5. HLA-DQ8 is encoded by HLA-DR4-DQA1*03:01, -DQB1*03:02.

The extremely high percentage of patients with CD carrying either HLA-DQ2.5 or HLA-DQ8 has led to the common practice of excluding CD in patients without these HLA types (1–5); however, other reports describe patients with CD who lack both HLA-DQ2.5 and -DQ8, making the validity of this strong negative predictive value questionable (6–8). Therefore, we set out to study the distribution of HLA subtypes in pediatric patients with CD in 2 medical centers in the Netherlands.


Study Population

The study consisted of 2 parts. A retrospective study was carried out in the VU University Medical Center, Amsterdam, the Netherlands, and included all biopsy-proven (Marsh III) pediatric patients with CD (n = 70; 50 girls, 20 boys) in whom HLA typing was performed between 2003 and 2011. In this cohort HLA typing had been performed without any earlier selection. To avoid skewing of the study population, all patients were diagnosed independent from the HLA typing. The average age at diagnosis in this group was 5.7 years, and the average age at the time that HLA typing was performed was 7.6 years.

A prospective study was performed in the Wilhelmina Children's Hospital, Utrecht, the Netherlands. In this part of the study, HLA typing was performed in all consecutive biopsy-proven (Marsh III) pediatric patients with CD (n = 85; 60 girls, 25 boys) in whom the diagnosis was made between December 2009 and June 2011. The average age at diagnosis was 6.2 years, whereas HLA typing was performed at an average of 6.5 years. In both the centers, the study was carried out according to the guidelines of the local medical ethical board.

HLA Typing

Genomic DNA was isolated from ethylenediaminetetraacetic acid-anticoagulated blood. In the VU University Medical Center, polymerase chain reaction (PCR)–amplified exon 2 amplicons were generated for low- to medium-resolution HLA-DQA1 and -DQB1 genotyping in a combined, single-stranded conformation polymorphism–heteroduplex assay by a semiautomated electrophoresis and gel-staining method on the PhastSystem (Amersham Pharmacia Biotech, Uppsala, Sweden) (9).

In the samples from the Wilhelmina Children's Hospital, typing the HLA-DQA1 and -DQB1 alleles was performed using the sequence-specific oligonucleotide Primed PCR (PCR-SSO) technique using the Luminex-based OneLambda LABType SSO Class II DQA1/DQB1 typing kit, following the recommendations of the manufacturer (One Lambda Inc, Canoga Park, CA). Descriptive statistics (SPSS for Windows, version 15.0; SPSS Inc, Chicago, IL) were used to calculate the frequencies of the most common HLA types.


As expected, the most prevalent HLA-type turned out to be HLA-DQ2.5. Remarkably, apart from HLA-DQ8, HLA-DQ2.2 (HLA-DQA1*02:01, -DQB1*02:02) was also found in a substantial number of patients.

In the retrospective cohort, the majority of the patients carried HLA-DQ2.5 (n = 63, 90%), of whom 20 (28.6%) patients also had HLA-DQ2.2 and 6 (8.6%) HLA-DQ8, leaving 37 (52.9%) patients who solely had HLA-DQ2.5 (Table 1). Of these patients, 6 (8.6%) were homozygous for HLA-DQ2.5. No patient was seen with only HLA-DQ8 because the 2 (2.9%) patients with this HLA-type also carried HLA-DQ2.2. Finally, a total of 5 (7.1%) patients lacked the typical HLA-DQ2.5 and -DQ8 genotypes. Interestingly, all of them carried HLA-DQ2.2, including 3 (4.3%) patients with homozygosity for the encoding genes. The 2 (2.9%) patients with heterozygous HLA-DQ2.2 also carried either HLA-DQ6.4 (HLA-DQA1*01:02, -DQB1*06:04) or -DQ2.3 (HLA-DQA1*03:02, -DQB1*02:02).

Frequencies of HLA types in pediatric patients with CD

In the prospective cohort, the distribution of HLA types among the patients with CD was virtually identical to the distribution in the retrospective cohort (Table 1). Most patients carried the typical HLA-DQ2.5 genes (n = 76, 89.4%). A total of 23 (27.1%) also had HLA-DQ2.2 and 5 (5.9%) HLA-DQ8. Of the 48 (56.5%) patients who carried only the HLA-DQ2.5 genotype, 15 (17.6%) patients were homozygous. HLA-DQ8 was present in 10 (11.8%) patients, of whom 6 (7.1%) patients also had either HLA-DQ2.5 (n = 5, 5.9%) or HLA-DQ2.2 (n = 1, 1.2%). A total of 4 (4.7%) patients only had HLA-DQ8, of whom 2 (2.4%) patients were homozygous. In addition, 4 (4.7%) patients were negative for both HLA-DQ2.5 and -DQ8. All these patients had HLA-DQ2.2 in the heterozygous form (Table 1). The other HLA-DQ subtypes in these 4 patients were HLA-DQ5.1 (HLA-DQA1*01:01, -DQB1*05:01) (twice), HLA-DQ5.3 (HLA-DQA1*01:04, -DQB1*05:03) and HLA-DQ9.3 (HLA-DQA1*03:02, -DQB1*03:03).

In the combined cohorts the most common HLA type amongst patients with CD was HLA-DQ2.5 (n = 139, 89.7%), although a significant number of these patients also carried HLA-DQ2.2 (n = 43, 27.7%) and less frequently HLA-DQ8 (n = 11, 7.1%) (Table 1). Twenty-one patients were homozygous for HLA-DQ2.5. HLA-DQ2.2 was the second most common HLA-type being present in more than one-third of the patients (n = 55, 35.5%), in most cases, however, combined with either HLA-DQ2.5 or HLA-DQ8. In 5.8% (n = 9) of the patients no HLA-DQ2.5 or HLA-DQ8 was found; however, in all those patients HLA-DQ2.2 was present, of whom 3 were homozygous (Table 1). These 9 patients were all symptomatic, had positive CD serology, and showed a good clinical and serological response to gluten elimination. One of these patients was of Jewish origin; all others were of Dutch descent.

Finally, HLA-DQ8 was the least frequent HLA genotype (n = 18, 11.6%) and most commonly present in combination with either HLA-DQ2.5 (n = 11, 7.1%) or HLA-DQ2.2 (n = 3, 1.9%). In only 4 (2.6%) patients HLA-DQ8 was present without HLA-DQ2.5 or HLA-DQ2.2 (2 homozygous and 2 heterozygous patients; Table 1).


A major proportion of the genetic predisposition to CD is derived from the HLA complex. Indeed, up to 90% of the CD patients carry the HLA-DQ2.5 heterodimer, historically called HLA-DQ2, while most of the remaining patients with CD are reported to express HLA-DQ8 (1–5). The finding that CD is virtually restricted to these HLA-heterodimers has led to the practice of considering HLA-DQ2.5 and HLA-DQ8 negative patients as being not at risk for CD.

However, in the current study, a different distribution of HLA types was seen. Although almost 90% of the patients indeed carried the HLA-DQ2.5 genotype, of the 16 (10.3%) patients lacking this HLA type only 7 (4.5%) had HLA-DQ8, while 9 (5.8%) patients were negative for both classical HLA types and would therefore be missed if relying on current practise (Table 1). Interestingly, those 9 symptomatic patients, who all had positive CD serology and quickly responded to the diet, possessed the HLA-DQ2.2 genotype. Of these 9 patients, 3 patients were homozygous and one patient also carried HLA-DQ2.3 (so homozygous DQB1*02), which is associated with a 5-fold increased risk of CD (10). The remaining 5 patients carried various other HLA types, so homozygosity for HLA-DQB1*02 cannot explain the development of CD in all patients lacking the typical HLA types.

A similar prevalence of HLA-DQ2.2 in CD patients has been described before in a European study and more recently in a retrospective American study (7,8). Both demonstrated a ∼4% prevalence of patients with CD who had HLA-DQ2.2, but no HLA-DQ2.5 or DQ8. In addition, a study performed in consecutive Spanish and Finnish patients with CD showed that HLA-DQ2.2 was present in 3.2% of the Spanish patients, but in none of the Finnish patients (6). Finally, Zubillaga et al also found a significantly increased prevalence of HLA-DQ2.2 in patients with CD (11).

Many other studies have stated that the development of CD is almost restricted to individuals with either HLA-DQ2.5 or HLA-DQ8; however in some studies HLA typing was limited to these 2 types, potentially missing patients with HLA-DQ2.2 (1–5,12–16). In addition, some typing methods do not distinguish between HLA-DQ2.5 and HLA-DQ2.2 (17,18). The fact that HLA-DQ2.2 is only rarely mentioned in previous studies might also be explained by sampling errors, especially as the HLA-DQ2.2 prevalence in the general population may vary between different countries and most studies were performed in small cohorts, which increases the risk of sampling errors. Given this possible selection bias and/or incomplete typing in previous studies, and with 4 reports, including the current one, now describing a 3.2% to 5.8% prevalence for HLA-DQ2.2 in CD, we propose that HLA-DQ2.2 should also be considered as a CD-related genotype. This will have important clinical implications, because HLA typing is an essential part of the new ESPGHAN guidelines for the diagnosis of CD (10).

In summary, the current study demonstrates that HLA-DQ2.2 is at least as frequent in patients with CD as HLA-DQ8. Consequently, to avoid missing patients with CD, the HLA-DQ2.2 genotype should be considered as one of the HLA types related to CD.


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celiac disease; diagnosis; HLA-DQ2.2; HLA-DQ2.5; HLA-DQ8

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