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A common polymorphism in the SCN5A gene is associated with dilated cardiomyopathy

Mazzaccara, Cristinaa,b,*; Limongelli, Giuseppec,*; Petretta, Mariod; Vastarella, Rossellac; Pacileo, Giuseppec; Bonaduce, Domenicod; Salvatore, Francescoa,e; Frisso, Giuliaa,b

Journal of Cardiovascular Medicine: July 2018 - Volume 19 - Issue 7 - p 344–350
doi: 10.2459/JCM.0000000000000670
Research articles: Heart failure
Open
SDC

Aims SCN5A is a disease-causing gene associated with familial dilated cardiomyopathy (FDC). We examined the possible association between a common polymorphism in the SCN5A gene (c.1673A>G-p.H558R; rs1805124) and the risk of dilated cardiomyopathy (DCM) occurrence.

Methods We genotyped 185 DCM cases (familial DCM, idiopathic DCM and postischemic DCM) and 251 controls for the p.H558R polymorphism in the SCN5A gene, to test the association of the molecular epidemiology of the individuals with the presence/absence of various types of DCM.

Results Our results showed that the rs1805124 polymorphism was significantly associated with DCM, and the association was more significant in patients with FDC; furthermore, in these individuals, the less frequent GG genotype was associated with a 7.39-fold increased risk of disease [95% confidence interval (95% CI) = 2.88–18.96; P < 0.0001] compared with the AA genotype. Moreover, logistic regression analysis showed that GG carriers had a higher risk of DCM than AA + AG carriers (odds ratio = 5.45, 95% CI = 2.23–13.35; P < 0.001). No association was observed between the rs1805124 and DCM risk in postischemic DCM patients.

Conclusion Our study demonstrates an association between familial DCM and the rs1805124 polymorphism in the SCN5A gene, which may unravel additional genetic predisposition to the development of a multifactorial disease as DCM.

aCEINGE-Biotecnologie Avanzate s.c.a r.l.

bDipartimento di Medicina Molecolare e Biotecnologie Mediche, Università di Napoli ‘Federico II’

cDipartimento di Scienze Cardiotoraciche e Respiratorie, Università degli Studi della Campania ‘Luigi Vanvitelli’, A.O. Monaldi, Azienda dei Colli

dDipartimento di Scienze Mediche Traslazionali, Università di Napoli ‘Federico II’

eIRCCS-Fondazione SDN, Napoli, Italy

Correspondence to Francesco Salvatore, MD, PhD, CEINGE-Biotecnologie Avanzate, Naples 80145, Italy Tel: +39 081 746 3648; fax: +39 081 746 3650; e-mail: salvator@unina.it;gfrisso@unina.it

Received 8 January, 2018

Revised 13 March, 2018

Accepted 24 April, 2018

This is an open access article distributed under the terms of the Creative Commons Attribution-Non Commercial-No Derivatives License 4.0 (CCBY-NC-ND), where it is permissible to download and share the work provided it is properly cited. The work cannot be changed in any way or used commercially without permission from the journal. http://creativecommons.org/licenses/by-nc-nd/4.0

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Introduction

Dilated cardiomyopathy (DCM; OMIM 115200) is the most common cardiomyopathy worldwide, with a prevalence of 40/100 000,1 and men are affected more frequently than women.2 However, population-based studies suggest that this prevalence may be underestimated.3,4 The most common DCM cause is ischemic heart disease, secondary to coronary artery disease (up to 70% of DCM cases).4–7 The remaining cases are usually nonischemic DCM, most of which (50–70%) are idiopathic DCM (IDC) due to an incomplete knowledge about the etiopathogenetic background.4,7–9 Features secondary to thyroid disease, iron overload, exposure to cardiotoxic drugs, chest radiation, inflammatory arthritis, infections (viral, bacterial, parasitic and fungal forms) or including structural heart disease (congenital or valvular) are less frequent causes of nonischemic DCM.1,9–11 Clinical and echocardiographic screening of first-degree relatives indicates that the 30–50% of IDC can be classified as familial DCM (FDC).1,6,8,9 The percentage of the diverse forms of DCM is variable and different estimates have been reported between 2011 and 2017.1,4,7–9,11–13 This reflects advances in the differential diagnosis, particularly after the implementation of DNA sequencing technology, mostly high throughput next-generation sequencing. Notably, the term ‘idiopathic DCM’ refers to a clinical diagnosis in which all identifiable causes were excluded, and was coined before genetic data became available.3 Thanks to advances in genetic diagnosis techniques, such as next-generation sequencing and whole exome sequencing, it is now known that an increasing portion of IDC cases are genetically based and the genetic effect is known in 30–40% of cases.9 However, this may be an underestimate because the FDC may be largely underdiagnosed because physicians and investigators may not know the family history of patients.

Genetic screening including all the genes known to be associated with DCM has a low sensitivity because of the very large genetic heterogeneity. To date, about 100 genes have been associated with DCM,12 most of which are autosomal and encode such structural components of the heart muscle such as the sarcomeric and cardiac Z-disk genes.10,12,14,15 Mutations in TTN, MYH7, LMNA and SCN5A genes, which appear to be pathogenic, are present in variable percentage, with Titin (TTN) being the most prevalent one.1,11,15,16 On the contrary, there is evidence that the natural history of DCM is different depending on the various causes.17 Moreover, mutations in the Sodium Voltage-Gated Channel Alpha Subunit five (SCN5A) gene have been implicated in DCM. The SCN5A gene, which encodes the human cardiac sodium channel α-subunit, is responsible for the fast depolarization upstroke of the cardiac action potential. SCN5A gene mutations are associated with various cardiac disorders, including arrhythmogenic syndromes, namely, long QT syndrome (LQTS), Brugada syndrome (BrS), familial atrial fibrillation, sick sinus syndrome (SSS), paroxysmal familial ventricular fibrillation and progressive familial heart block type IA (PFHB1A), as well as with the structural cardiomyopathies such as DCM.18,19

The rs1805124 (c.1673A>G; p.H558R) polymorphism in exon 12 of the SCN5A gene (minor allele frequency: 23%) is relevant for the phenotypic expression of several coexisting mutations,20–23 and for the biophysical behaviour of the sodium channel.24 Although rs1805124 has been associated with various cardiac disorders,25–27 no studies have evaluated the prevalence of this polymorphism in DCM patients. This study demonstrates an association between rs1805124 and DCM particularly in patients with the familial form of the disease.

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Materials and methods

Study participants

One hundred and eighty-five unrelated patients (78.9% male) with DCM were enrolled since June 2009 and followed on average for 1.5 years at the Department of Cardiomyopathy and Inherited Heart Disease Clinic, UOC Cardiology, University of Campania ‘Luigi Vanvitelli’ of Naples and at Department of Translational Medicine, University Federico II of Naples. The study population was drawn from index patients referred for clinical DCM diagnosis. DCM was defined as dilated, hypokinetic left ventricle: left ventricular end-diastolic diameter (LVEDd) more than 117%, predicted value corrected for age and body surface; left ventricular systolic dysfunction (LVSD) defined by left ventricular ejection fraction (LVEF) less than 45% and/or fractional shortening less than 25%.9 In presence of at least two DCM-affected family members and/or premature sudden cardiac death(s) (i.e. ‘familial DCM’), a cut off of LVEDd more than 112% and LVEF less than 50% or fractional shortening less than 28% were considered.9 DCM patients with systemic involvement due to neuromuscular or mitochondrial disorders were excluded. A detailed family history screening of DCM patients revealed 56 patients affected by FDC. Fifty postischemic patients (pi-DCM) with evidence of coronary artery disease and/or myocardial infarction with normal coronary arteries were enrolled. This group underwent invasive and noninvasive coronary evaluation to determine whether they were affected by postischemic DCM, using coronary imaging test, echocardiography and cardiac magnetic resonance (CMR). Finally, 79 patients with IDC were identified, after excluding coronary artery disease (>50% in one or more major branches), cardiotoxic exposures, systemic disease known to cause DCM, viral infections, alcohol abuse and severe hypertension (>160/100 mmHg). Because a genetic cause is identified in almost all patients with FDC and in almost all IDC, we combined these two cohorts in a single subgroup designated no-ischemic dilative cardiomyopathy (ni-DC). A total of 251 age, sex and ethnicity-matched healthy control individuals, unrelated to each other, were recruited in the same period at the same centres. Controls had no personal or family history of cardiovascular disease, no cardiovascular risk factors (i.e. diabetes, hypertension or hyperlipidaemia) and had unremarkable ECG and/or echocardiographic reports. All cases and controls were of European-Caucasian origin. Informed consent to perform genetic analysis was obtained from patients and controls, according to the second Helsinki Declaration.28

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Genetic analysis

Four millilitres of whole blood in vacuum collection tubes with EDTA-K2 were collected from patients and healthy control individuals. DNA was extracted by standard method29 and stored at −80°C. We genotyped both DCM patients and healthy control individuals by conventional dideoxy-chain-termination methodology,29 for the c.1673A>G (p.H558R) polymorphism (rs1805124) in the SCN5A gene. To facilitate the sequencing analysis, a sequence-priming universal from the fago λM13 (M13 forward TGTAAAACGACGGCCAGT; M13 reverse CAGGAAACAGCTATGACC) was included at 5’ of forward and reverse primers.30 Codon Code software (CodonCode Aligner version 2.5) was used to compare the sequences of patients and controls with the SCN5A Reference Sequences (Ref Seq NM_198056.2). Variant call rate was successful in all individuals and genotyping was done blind to case–control status.

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Statistical analysis

Statistical analysis was performed using the SPSS software, version 22.0 (SPSS Inc., Chicago, Illinois, USA). The Hardy–Weinberg equilibrium in all patients and controls was verified by the χ2 test. The distribution of the continuous variables was assessed using the Kolmogorov–Smirnov test. Median (2.5th–97.5th percentiles) was estimated for nonparametric continuous variables. Categorical variables were expressed as percentages. Clinical, anamnestic and demographic data from ni-DC and pi-DC patients were compared using Mann–Whitney test for continuous variables and Pearson Chi-square test for categorical variables. Pearson Chi-square test was used to identify statistically significant differences in allele and genotype frequencies of the rs1805124 polymorphism, in the whole DCM population, as well as in FDC, ischemic DCM, ni-DC and pi-DC patients versus healthy control individuals. Logistic regression analysis was carried out to calculate odds ratios (ORs) and 95% confidence intervals (95% CIs) of c.1673A>G homozygous and heterozygous genotype versus wild-type c.1673A>G (reference group) to calculate the DCM risk in the whole DCM cohort and in the FDC; ischemic DCM, ni-DC and pi-DC patients. To test the association with the predisposition to DCM risk, we constructed dominant and recessive models for the rare allele of the rs1805124 polymorphism and calculated the univariate OR with 95% CI.

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Results

Clinical characteristics of dilated cardiomyopathy patients and controls

A total of 185 DCM patients [median age at diagnosis 48 years (25th–75th percentiles = 36–56); male 78.9%] and 251 age and sex-matched controls [median age 58.0 years (25th–75th percentiles = 31.0–70.0); Male 74.0%; LVEF (%): median 60.0 (25th–75th percentiles = 58.0–66.0)] of the same regional area (Southern Italy) were enrolled in the study. The clinical, anamnestic and demographic characteristics of the two groups are reported in Table 1. Female patients were diagnosed at an earlier age than male (Table 1). Table 2 summarizes the data of nonischemic patients (i.e. those with FDC and those with IDC) designated ‘ni-DCM’ and those of postischemic (pi-DC) patients. The clinical, anamnestic and demographic characteristics were similar in the two groups, except for sex, age at diagnosis and left ventricular ejection fraction. Particularly, ni-DC patients showed an early age at diagnosis compared with pi-DC (44.0 versus 54.0; P < 0.0001).

Table 1

Table 1

Table 2

Table 2

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Screening for c.1673A>G polymorphism (rs1805124) in SCN5A gene

The Hardy–Weinberg equilibrium of the c.1673A>G polymorphism was positive (P > 0.05 for all the case cohorts and for the control group). Allele and genotype distribution did not differ significantly between men and women in either the patient or control group. Then, allele and genotype frequencies of c.1673A>G polymorphism in SCN5A gene (rs1805124) were compared between the whole DCM groups as well as the ni-DC and pi-DC versus controls (Table 3).

Table 3

Table 3

The genotype frequencies of the c.1673A>G polymorphism differed significantly between DCM patients and controls (P = 0.006). Moreover, allele and genotype frequencies of the c.1673A>G polymorphism differed significantly between ni-DC and controls (P = 0.04; P = 0.001, respectively). Conversely, no significant differences were found between pi-DC patients and controls. Furthermore, the whole DCM cohort and ni-DC patients with the GG genotype had a higher disease risk than controls (OR = 2.78,95% CI = 1.26–6.13, P = 0.011; OR = 2.73, 95% CI = 1.70–8.55, P = 0.001, respectively). Subsequently, the same comparisons were performed between the FDC and IDC patients versus controls (Table 4).

Table 4

Table 4

The allele and genotype frequencies of the c.1673A>G polymorphism differed significantly between patients with FDC (P = 0.0005; P ≤ 0.0001, respectively) and controls, but not between patients with IDC and controls. Furthermore, at regression analysis, the GG genotype conferred a significantly higher risk of disease (P < 0.0001) in patients with FDC (OR 7.39, 95% CI 2.88–18.96) that in controls.

At univariate analysis of the SCN5A rs1805124 polymorphism performed using two genetic models of inheritance (dominant and recessive model), the rs1805124 polymorphism was significantly associated with predisposition to DCM under a recessive but not under a dominant model in the whole DCM population and particularly in ni-DC and FDC groups (see OR values in Table 5).

Table 5

Table 5

These results indicate that the homozygous rs1805124 genotype (GG) was significantly associated with disease risk in ni-DC (OR 3.14, 95% CI 1.43–6.92; P = 0.006), and particularly in FDC (OR 5.45, 95% CI 2.23–13.35; P < 0.001). Overall, the attributable risk of DCM in our patients indicated that GG genotype at position c.1673 of the SCN5A gene accounts for 21% of disease risk and for 28% when postischemic cases were excluded from the analysis.

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Discussion

This is the first study to report a significant association between the c.1673G>A polymorphism of the SCN5A gene and the development of genetically based DCM, in particular in patients with FDC. Mutations in the SCN5A gene, encoding the α-subunit of voltage-gated sodium channel, responsible for the fast depolarization upstroke of the cardiac action potential, have been reported in a variety of cardiac diseases. For example, the loss-of sodium channel function mutations result in BrS subtype-1, idiopathic ventricular fibrillation, cardiac conduction diseases and congenital sick sinus syndrome, whereas gain-of-function mutations are mainly associated with congenital LQTS type 3 and atrial fibrillation.18,19,31 In addition, SCN5A mutations related to both loss and gain function have also been linked to DCM, which suggests that dysfunction in electrical excitability, caused by disturbance of sodium channel function, also leads to dilation remodelling.32–34 It has been suggested that deranged functioning of the SCN5A channel may cause dysfunction of cytoskeletal protein binding partners and so result in DCM.32,35 Moreover, Gosselin-Badaroudine et al.36 demonstrated that the SCN5A-R219H mutation causes an inward proton current thereby producing intracellular acidification of cardiac myocytes that could cause the DCM phenotype. Furthermore, gain-of-function mutations increase intracellular sodium concentration thereby causing a secondary increase in intracellular calcium that, in turn, leads to cellular remodelling and heart failure.37,38 The p.H558R polymorphism, located in the interdomain linker loop 1–2, is a polymorphism in the SCN5A gene reported to be relevant in modulating the effects of coexisting SCN5A mutations in DCM, sick sinus syndrome, BrS and other cardiac disorders.20–23 It also affects the biophysical behaviour of the normal channel.24 In particular, Cheng et al.20 found that the combined variants p.R222Q/p.H558R and p.I1835T/p.H558R caused a reduction in INA peak density in two DCM families, but not in families carrying only p.R222Q and p.I1835T, which confirms the crucial role played by p.H558R in the cellular biophysical phenotype of DCM-related SCN5A variants. The p.H558R polymorphism restores gating and trafficking anomalies induced by mutations.23,39–41 It has been reported that the R558 allele may have a reduced cardiac INA peak density in wild-type channels showing the splice variant lacking glutamine at position 1077 (Q1077del), which reaches 65% of the SCN5A transcript in heart.24 To date, few studies have evaluated the presence of the p.H558R alone, as a risk factor for atrial fibrillation, Purkinje-related ventricular fibrillation and Keshan disease,25–27 but no studies have investigated the prevalence of this polymorphism in DCM patients. We hypothesized that the p.H558R polymorphism is a risk factor for DCM. First, clinical, anamnestic and demographic analysis of the patient data displayed that men, as compared with women, were more frequently affected by DCM as expected.42,43 On the contrary, women showed a lower age at diagnosis, with respect to men, probably related to the high incidence of nonischemic DCM in the female group. In fact, when we split the whole DCM population into nonischemic and postischemic DCM patients, the comparison between these two groups showed a lower age at diagnosis and a higher ejection fraction in the nonischemic DCM patients, as the onset of disease is generally earlier in ni-DC and the clinical presentation (including haemodynamic status and cardiac function) is generally more heterogeneous than pi-DC. We observed statistically significant differences in frequencies of p.R558H genotypes, both in whole DCM cohort (P = 0.006), and in ni-DC (P = 0.001) and mostly in FDC (P < 0.0001) subgroups of patients, compared with normal controls. Particularly, our results indicate that the presence of the polymorphism is associated with the risk for DCM, primarily in the familial forms (OR: 2.22 and 7.39 for the AG and GG genotypes, respectively). Interestingly, the association was still strongly significant in the ni-DC group (OR: 1.73 in heterozygous and 2.73 in homozygous). Instead, no association, both for genotype and DCM risk, was found in the pi-DC patients. These results, also confirmed by univariate analysis, under a recessive model, indicate that the GG genotype was significantly associated with DCM risk in ni-DC and particularly in familial cases.

DCM is a multifactorial disease that develops when genetic and environmental factors together reach a threshold to disease.

Furthermore, genetic forms of DCM are also suggested by the presence of clinical-laboratory traits, sometimes referred to as diagnostic red flags.44 The presence of clinical-laboratory evidence such as atrio-ventricular conduction abnormalities, improvement of markers (i.e CPK, BNP/NT-proBNP) or familial history of DCM may suggest a genetic substrate for the DCM disease. 45

In the last two decades, it has been demonstrated that genetic variations in numerous genes may contribute to the pathogenesis of FDC,6,46,47 or may be disease-associated polymorphisms that control the susceptibility to DCM,48 although each polymorphism alone may determine the disease at a small percentage. Our results demonstrate that the GG genotype of the rs1805124 polymorphism in the SCN5A gene confers a risk of disease of about 3% in the whole DCM population, which increases to more than 7% in the case of clear inheritance. The attributable risk of DCM in patients with the GG genotype was between 20 and 28%, depending on considering the whole DCM population or only ni-DC cases.

The possible mechanism underlying the association between the p.H558R polymorphism in SCN5A gene and DCM phenotype is difficult to establish. The presence of a sodium channel with a slight decrease of INA density may be another genetic/environmental factor that contributes to the development of DCM primarily in the presence of disease-causing variations.

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Study limitations

Our study population was not very large and limited to tertiary centres of a specific geographic area. Thus, we cannot exclude the presence of selection bias in patient enrolment. Consequently, the data should be replicated and extended to larger populations of other ethnic groups worldwide.

Although the principal finding of this study is that common variant rs1805124 is associated with DCM (in particular in patients with FDC), a common genetic background arising from different pathogenic or likely pathogen mutations modulating DCM phenotype has not been investigated in detail because of a more sophisticated sequencing approach. Moreover, further investigation needs to characterize, ideally on a prospective base, the effect of this polymorphism and other genetic and nongenetic modifiers in patients with ischemic and nonischemic DCM.

Further limitations are the lack of ECG data as well of clinical-laboratory clues previously associated with a genetic DCM substrate, which should be performed in a prospective study (see also ref. 45).

Furthermore, a better characterization of the nonischemic group and eventual differences in myocardial remodelling related to the gene mutations would definitely represent an important point, but it would be certainly possible to investigate it on a prospective base.

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Conclusion

The c.1673G>A polymorphism of the SCN5A gene is significantly associated with the development of genetically based DCM, particularly the familial form. To our knowledge, this is the first report about rs1805124 and DCM, and may impact on primary prevention of DCM, namely to identify at-risk individuals, which is also the basis of the personalized medicine. In our setting, this concept refers to genetic risk factors. Therefore, the presence of c.1673G>A might be considered a predictive risk factor for the development of the disease in DCM families. In the assessment of relatives at risk for the disease, special attention should be paid to asymptomatic carriers of the p.H558R polymorphism of DCM from an early age.

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Acknowledgements

The authors thank Jean Ann Gilder (Scientific Communication srl., Naples, Italy) for writing assistance, and Vittorio Lucignano, CEINGE–Biotecnologie Avanzate, for technical assistance.

This work has been supported by Grant PON03PE_00060_2 and PON03PE_00060_7 (Campania - Bioscience) from the Italian Ministry of University and Research (to Francesco Salvatore).

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Conflicts of interest

There are no conflicts of interest.

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* These authors contributed equally to this work.

Keywords:

association study; dilated cardiomyopathy; genetics; molecular epidemiology; polymorphism in SCN5A gene

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