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Prevention Research

Network Viral Load: A Critical Metric for HIV Elimination

Skaathun, Britt PhD, MPH*; Khanna, Aditya S. PhD; Morgan, Ethan PhD*; Friedman, Samuel R. PhD; Schneider, John A. MD, PhD*,†

Author Information
JAIDS Journal of Acquired Immune Deficiency Syndromes: February 1, 2018 - Volume 77 - Issue 2 - p 167-174
doi: 10.1097/QAI.0000000000001584
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Abstract

BACKGROUND

HIV prevention interventions, such as preexposure prophylaxis (PrEP) and treatment as prevention (TasP), offer potential for great reductions in HIV transmissions.1–4 In recent years, the number of new HIV diagnoses in the United States, eg, has remained stable at around 50,000 cases per year,5 indicating the need for more effective HIV prevention programs to achieve further reductions in new HIV diagnoses.

TasP has been shown to reduce the number of phylogenetically linked HIV transmissions by 96%.1 The TasP approach is effective because it lowers HIV viral load, which limits onward transmission.6,7 Some public health departments have used this association on a population level for the targeting of HIV prevention resources: The San Francisco Department of Public Health, eg, calculated an aggregate viral load measure for different geographic areas within the city, the “community viral load” (CVL), and considered associations between CVL and new HIV diagnoses by geographic area.8 Decreasing CVL was found to be associated with a decline in the number of new HIV diagnoses over a 5-year period.8 Although these findings are promising, the CVL approach has several limitations,9 most notably that the CVL assumes that individuals transmit HIV primarily to other individuals in the same geographic area as them. With the advent of hookup apps and easier mobility within and across cities,10 HIV transmission has increased potential to occur in more heterogeneous contexts and networks. A recent phylogenetic analysis in Chicago, eg, demonstrates that the HIV virus of black young men who have sex with men (YMSM) in Chicago was phylogenetically similar throughout geographically diverse areas where HIV-infected YMSM reside. This indicates that HIV is transmitted across communities, and that the CVL may therefore not be capturing these cross-community exposures.11

Miller et al9 and Herbeck and Tanser12 also note that the aggregate CVL measure is limited in that it only captures those in HIV care, it does not consider the prevalence of the underlying population, and it ignores the composition of one's sexual network.9 They suggest instead calculating a “population viral load” that estimates the viral load of an “entire population” in a community (ie, HIV seronegative and HIV seropositive) and establishing thresholds for increased transmission potential.9 This population viral load measure, however, is still geographically bounded because it does not account for risk experienced outside one's geographic area or within their geographic area with those from without.

A more precise metric would account for the composite viral loads of the risk networks of an HIV-negative individual, regardless of the geographic location of either the individual or the network member. Here, we develop this new metric, the network viral load (NVL),13 that accounts for the composite viral loads of a risk network sample of an HIV-negative individual. We test its association with HIV infection among a population-based cohort of YMSM.

METHODS

Study Population

Data come from the baseline sample of uConnect, a longitudinal study of YMSM ages 16–29 who reside in Chicago, conducted over an 18-month period from 2013 to 2016.14–17 Respondent-driven sampling (RDS) was used for recruitment. RDS seeds were selected from a distribution of social spaces that YMSM occupy (both physical spaces and virtual spaces such as Facebook). Eligibility criteria included the following: (1) self-identification as African American or Black, (2) born men, (3) between 16 and 29 years of age (inclusive), (4) report of oral or anal sex with a men within the past 24 months, (5) willing and able to provide informed consent at the time of the study visit, and (6) primary residence in South Chicago, the most populous contiguous Black community in the U.S.14 The city of Chicago is broken down into 77 community areas, and South Chicago is a 95-mi2 area that houses 34 of these community areas.18 Respondents were given 6 vouchers to recruit others they know who they have frequent contact with who fit the eligibility criteria. Each respondent was given $60 for participation and $20 for each successful recruit enrolled into the study. Respondents were administered a behavioral questionnaire and tested for HIV and HIV RNA. The Institutional Review Board at the University of Chicago and the National Opinion Research Center at the University of Chicago approved all procedures.

Laboratory Testing

HIV infection was determined by 3 assays applied to samples eluted from dry blood spot samples: ARCHITECT HIV Ag/Ab Combo; Multispot HIV-1/HIV-2 Bio-Rad; and Realtime HIV-1 RNA, Abbot. In cases where test data were missing at the study visit, available HIV viral load and serostatus surveillance data were used from the Health Department by matching on name and demographic information. We obtained a Release of Information from each respondent to obtain these data.

Network Construction

HIV risk–related networks were constructed from the RDS recruitment network as previously defined by Tsang et al,19 consisting of RDS referrals and referees. This “risk environment network” definition exploits the RDS referral structure in a novel way by situating the referrals and referees as part of a respondent's HIV risk environment network.20–23 The risk network as we define it represents a sample of network members from their immediate risk environment. Risk environments have been previously defined as the composition of risk factors external to the individual, such as community level norms and practices.24 This definition is particularly relevant to YMSM by virtue of their tendency to recruit and be recruited by individuals who share close social connections. Likewise, the networks of YMSM are dynamic, with social connections becoming sexual connections and vice versa at a high frequency over time.17 Given the high HIV prevalence in this population, the significant overlap between the sexual and social networks of black MSM,25 and the notable influence that social networks have on HIV preventive behaviors and transmission patterns,25,26 this definition of one's HIV-related network could be useful for effective HIV prevention efforts.

Analytic Plan

Measures

The outcome of interest was HIV serostatus, defined by laboratory testing during the study visit or data obtained through the Health Department. The primary independent variable of interest was a respondent's NVL; NVL was defined as the prevalence rate of viremic individuals in one's immediate (first degree) risk network. Viremia was characterized as those with a viral load of ≥20 k copies/mL.6 The NVL was then summarized into the following categories: all network members were HIV seronegative, at least one network member was HIV infected and <10% of the network was viremic, and at least one network member was HIV infected and ≥10% of the network was viremic (Fig. 1). These categories reflect relative cutoffs that designate risk of transmissibility6 and the distribution of the NVL in the sample.

F1
FIGURE 1.:
Example sociogram depicting NVL calculation.

Other covariates include (1) non–injection drug use or alcohol use during sex (drugs included marijuana, 3,4-Methylenedioxymethamphetamine, volatile nitrates, cocaine, heroin, psychoactive drugs, methamphetamines, and prescription pain killers). Sex–drug use was a dichotomous measure indicating use of any of the aforementioned substances; (2) frequency of condomless anal sex in the past 6 months (defined as the sum of the number of times the respondent reported sex with each sexual partner they reported inconsistent condom use with in the past 6 months); (3) self-reported syphilis diagnosis in the past 12 months (any/none); (4) degree (total number of sex partners and confidants reported by the respondent combined); and (5) other demographics and social characteristics. Injection drug use was not assessed because of its low prevalence in the sample. Analyses excluded respondents in the last RDS wave because their networks were incomplete and were therefore unable to recruit others as a result of the sample design.19

Analysis

Multivariate logistic regression was used to assess the relationship between HIV serostatus and NVL at baseline. Variables significant at the P ≤ 0.1 level in bivariate analysis were considered in the multivariable model. All variables retained in the final model were significant at the P ≤ 0.05 level.

Two additional exploratory analyses were conducted to try and ascertain causality. They first assessed the association between NVL and HIV seroconversion over the 18-month study period. Seroconversion was defined as having an HIV-negative laboratory result at baseline and having an HIV-seropositive laboratory result at either of the 2 follow-up visits. Last, we calculated mean CVL using Enhanced HIV/AIDS Reporting System data (state-mandated laboratory data) from the Health Department. We assessed associations between CVL and respondent HIV serostatus using logistic regression. The second, conducted by Morgan,27 assessed the overlap between the NVL network and phylogenetic data. Genotypes were collected at baseline and through the Chicago Department of Public Health HIV surveillance data on participants identified as HIV positive. Potential molecular ties were identified through pairwise genetic distance analysis of HIV-1 pol sequences with links inferred between individuals whose viral sequences were ≤1.5% genetically distant. Putative molecular clusters were defined as ≥1 connection to another individual.

All regression analyses were conducted using Stata version 14.28 Permutation analyses were conducted in R version 3.3.1.29

Sensitivity Analysis

Assumptions of independence between observations assumed by the logistic regression30 are violated by network data. A series of permutation tests were conducted to verify the associations found in the multiple logistic regression model. Each permutation retained the original network structure but randomly assigned the viral loads and HIV serostatuses throughout the network. This null hypothesis was that one's own HIV serostatus is unrelated to the viral loads of the individuals in one's egocentric network. Five thousand permutations were performed to obtain an estimate of the permutation distribution for the odds ratios (ORs), and the likelihood of the observed ORs was evaluated relative to this distribution, yielding a 2-sided permutation P value.19

We repeated the NVL analysis using lower viral load thresholds of 3500 copies/mL, and 10,000 copies/mL as well as replacing the NVL with the proportion of respondents' networks that are HIV infected, to determine whether there is any added benefit of assessing NVL over network HIV infection alone, a method which we have conducted previously on a network sample of people who inject drugs.19 HIV-seropositive network environment proportions were coded as 0%, 1%–49%, 50%–75%, and >75%. Categories were selected based on the distribution of the HIV-seropositive network proportions in the sample.

RESULTS

Our sample included 65 seeds who generated a baseline sample of 618 respondents. Referred network members were mostly individuals known to the index and in 77% of the cases included close confidants, sex partners, or family members (largely family of choice rather than biological family). Only productive seeds (n = 38), defined as seeds who recruited at least one participant, were included in the analyses. Excluded from the analyses (including their presence in networks) were 89 respondents in the final RDS wave because they were unable to recruit by design, and thus, the size of their networks was restricted in a way that the networks of other respondents were not. The total sample size after these exclusions was 502; of these, we had laboratory data on 91%, yielding a total sample size of 457.

The mean age of the participants was 23 years (range 16–29), 100% were Black/African American, 61 (13%) had less than a high school degree, 331 (66%) and 138 (27%) identified as gay and bisexual, respectively, 149 (33%) were unemployed, 235 (51%) had health care coverage, 20 (4%) had ever used PrEP, 129 (26%) were unstably housed in the past 12 months, and 233 (46%) had ever experienced criminal justice involvement (Table 1). The HIV prevalence in the sample was 39% (n = 182).

T1
TABLE 1.:
Demographics, Behavioral Characteristics, and HIV Serostatus uConnect (n = 457)

The mean risk-related network size was 1.9 (range 1–7). The distribution of NVL in the sample was as follows: 212 (46%) had entirely HIV-seronegative networks, 169 (37%) had an NVL of <10% viremic, and 76 (17%) had an NVL of ≥10% viremic. HIV-seropositive network proportions were as follows: 212 (46%) had 0% HIV-seropositive network partners, 45 (10%) had 1%–49% HIV-seropositive network partners, 68 (15%) had 50%–75% HIV-seropositive network partners, and 132 (29%) had >75% HIV-seropositive network partners. Respondents had an average of 2 men or transgender anal sex partners in the past 6 months (range 1–6) and reported having condomless sex with an average of 1 partner in the past 6 months (range 0–6).

After controlling for age, substance use during sex, frequency of anal sex in the past 6 months, degree, and syphilis diagnosis in the past 12 months, we found increased odds of HIV infection with increased NVL (Table 2). The odds of HIV infection with an NVL of <10% viremia were 1.85 times that of a network with all HIV-seronegative members [OR 1.85; 95% confidence interval (CI): 1.18 to 2.92], and the odds with an NVL of ≥10% viremia were 2.75 times that of a HIV-seronegative network (OR 2.75; 95% CI: 1.54 to 4.85). A test for trend of the NVL was significant at P = 0.001, indicating increased odds of HIV infection with increasing levels of NVL. Increasing age was also associated with increased odds of HIV infection (OR 1.10; 1.03–1.18) and being diagnosed with syphilis in the past 12 months (OR 4.26; 2.38–7.61). Drug use during sex was a strong confounder of the relationship between NVL and HIV infection. No effect modification was found between NVL and any of the covariates in the model.

T2
TABLE 2.:
Multivariate Logistic Regression: Factors Associated With HIV Serostatus: uConnect Study (n = 425)

The permutation test results reveal that observed ORs of 1.85 and 2.73 comparing <10% viremia NVL and ≥10% NVL to the reference group of a completely HIV-seronegative NVL are both located on the extreme tails of the permutation distributions, yielding estimated P values of <0.002 (8/5000) and 0.014 (70/5000), respectively (Fig. 2). This finding indicates that the observed associations were unlikely under the null hypothesis.

F2
FIGURE 2.:
Comparison of observed NVL results and 5000 randomly generated networks (reference line indicates observed odds ratio). AOR, adjusted odds ratio.

Of the 275 respondents who were HIV negative at baseline, 270 (98%) had follow-up data. Of those, 28 (10%) seroconverted to HIV-seropositive over the 18 months of follow-up. Although this rate is high, it is not substantial enough to be adequately powered for multivariate analysis. Nevertheless, descriptive results using lower NVL thresholds show signs of a potential association between NVL and HIV seroconversion. A slightly lower proportion of those who seroconverted had entirely HIV-seronegative networks at baseline (50%) compared with those who remained negative over the course of the study (56%). In addition, a slightly higher proportion of those who seroconverted had an NVL of ≥10% viremia (14%) compared with those who remained negative (11%). These differences were not statistically significant (P = 0.65).

Of participants identified as HIV positive, we obtained viral genetic sequences on 32%. Of these, 31 (40.7%) were tied to ≥1 other sequence with a total of 55 ties between all individuals. We did not find any overlap between the phylogenetic network and the RDS network. There was overlap in members between the RDS network and the sexual and social networks, however. Approximately 44.6% of the RDS ties were also listed as social ties, and 30% of RDS ties were also listed as sexual ties (Fig. 3).27

F3
FIGURE 3.:
Network diagrams for all individuals for whom we obtained an HIV genetic sequence in the molecular, RDS, sexual, and confidant networks.

The city of Chicago is organized into 77 community areas.31 We calculated mean CVLs for each community area in Chicago using Health Department data and assessed whether it was associated with HIV serostatus using logistic regression. We found insignificant results in a bivariate analysis between CVL and respondent HIV serostatus (OR 0.99; 95% CI: 0.99 to 1.00) as well as in a multivariate analysis including the covariates from the NVL multivariate model (OR 0.99; 95% CI: 0.99 to 1.00).

DISCUSSION

The current analysis establishes the relationship between a new metric, NVL, and HIV serostatus. We found that the strength of the association between NVL and HIV serostatus was positively associated with the magnitude of the NVL and that the association was significant after adjusting for other common drivers of HIV infection including age, non–injection drug use or alcohol use during sex, frequency of condomless anal sex, syphilis diagnosis, and degree social connectivity.

The U.S. Centers for Disease Control and Prevention (CDC) recommends monitoring of CVL as a mechanism for measuring progress toward the National HIV/AIDS Strategy goals.32 However, shortly after this recommendation, Miller et al9 and Herbeck and Tanser12 emphasized the limitations of an aggregate viral load measure, highlighting the importance of considering the composition of an individual's sexual network and the prevalence of the underlying population.9 The NVL is a response to these limitations because it is a more precise metric for addressing HIV transmission potential.

There is at least one other network index that has been explored previously. An analysis by Little et al33 of recently HIV-infected adults and adolescents in San Diego examined multiple factors, such as a transmission network score (an individual's degree in a phylogenetic transmission network), viral load, and number of sex partners. The study found that the numeric transmission network score, viral load, and number of sex partners (all measured at baseline) predicted risk of HIV transmission during a 12-month period.33 The NVL model, in contrast, considers a variation of these factors but focuses on the risk of acquisition among HIV-seronegative individuals rather than the transmission capacity of those recently infected as performed by Little et al.33

The utility of the NVL is enhanced because health departments can easily create it by combining partner services and electronic laboratory surveillance data. The NVL is also different from other approaches in that it focuses on the risk of acquisition of an HIV-negative individual, which may have important implications for precision PrEP delivery. Furthermore, the NVL may also be useful for identifying HIV-infected index individuals who have uncontrolled viremia, given their propinquity to others (both social and sexual partners) who also have high viral loads. We examined the association between viral load of the index and NVL and found a correlation between the respondents' viral loads and the viral load of their networks (r = 0.16, P = 0.001). The NVL metric could also be used for mathematical modeling to measure the additive impact of reducing the NVL by varying percentages. Providers could then use these results as added incentive to control their patients' viremia because they would be better informed of the impact that each controlled patient has on HIV transmission throughout different risk populations.

Our study is limited in its ability to infer causality between NVL and HIV acquisition because of the cross-sectional nature of the study design. However, our longitudinal seroconversion results indicate that baseline NVL may be associated with incident HIV infection in larger samples. Studies of YMSM in the U.S. with longer follow-up time, which allows for a greater number of seroconversions, are warranted. The metrics should also be tested in international settings among populations with higher incidence rates to assess their effectiveness. We did not find any overlap between phylogenetic clusters and any other network type with the small number of samples we were able to sequence. This finding of limited overlap is similar to a growing body of research that demonstrates limited overlap between phylogenetic and other social/sexual/risk networks.34–39 The lack of overlap has been attributed to missing network or phylogenetic data (as in our case, we have selected only a sample of the network for this analysis) that are common, as well as temporal differences between phylogenetic sample collection and self-reported transmission network.

The current analysis provides proof of principle and does not account for the dynamic nature of the networks or the timeframe of the viral load measurements. The network data collected can be viewed as a sample of one's overall network, similar to how a study sample represents a larger population. The NVL is an approximation of a respondent's average network composition at a given point in time, and our assumption as in most dynamic systems is that the network ties that are represented are in flux with some forming and some dissolving. The permutation analysis randomly assigning network members to different networks demonstrates that there is no association between NVL and an index's HIV serostatus when randomly assigned.

Another potential concern is whether or not NVL is a better indicator of HIV risk than assessing the proportion of HIV+ individuals in one's network as we have measured previously,19 or if other viral load cutoff should be used for the definition of the NVL. After controlling for all the variables in the main multivariate analysis, using a cutoff of 3.50 copies/mL revealed that the odds of HIV infection with an NVL of <10% viremia were 2.01 times that of a network with all HIV-seronegative members (OR 2.01; 95% CI: 1.20 to 3.35), and the odds with an NVL of ≥10% viremia were 2.59 times that of an HIV-seronegative network (OR 2.59; 95% CI: 1.55 to 4.33). Using a cutoff of 10,000 cpd per milliliter in the same model, the odds of HIV infection with an NVL of <10% viremia were 1.97 times that of a network with all HIV-seronegative members (OR 1.97; 95% CI: 1.23 to 3.16), and the odds with an NVL of ≥10% viremia were 2.30 times that of a HIV-seronegative network (OR 2.30; 95% CI: 1.36 to 3.89). This indicates that any level of virus in the network >3500 copies/mL may be of concern.

The sensitivity analysis replacing NVL with HIV network proportions in the multivariate logistic regression model showed that when compared with an entirely HIV-seronegative network, only networks consisting of ≥50% HIV-infected members are associated with HIV infection. The NVL is a more precise measure of circulating virus in the risk environment than the proportion of HIV-seropositive individuals who may or may not be virally suppressed.

The NVL association with HIV serostatus could likely be strengthened if all sexual connections and HIV viral loads of those partners are included. However, sex network data are rarely complete.40 It is difficult to determine how the incomplete data will bias the analyses. If participants do not report network partners who are likely to be HIV positive with uncontrolled viremia, then our analysis would be a conservative estimate of the association between network viral load and HIV status. However, if respondents neglected to report HIV-negative respondents, then the current analysis would be overestimating one's network viral load. We assessed a model with an interaction between NVL and one's frequency of anal sex but found null results, perhaps because of the possibility that anal sex occurred with individuals who were unobserved in these analytic networks. Although the networks in our analysis may not be complete, they may be a more realistic representation of the network that would be obtained through partner services, which is the standard practice. In partner services, less than 50% of contacts are typically ever identified.40 Targeting YMSM through strictly defined sex networks has proven unsuccessful in Chicago and in North Carolina in the U.S., given stigma and the fact that an increasing percentage of sex partners is being found online.10

The NVL has potential to improve public health practice in the U.S. Current state laboratory reporting laws combined with existing contact tracing practices and the increase in uptake of electronic laboratory reporting could allow for an NVL calculation of individuals at risk for HIV infection. Currently, 36 states plus the District of Columbia require laboratory reporting of all levels of CD4 and viral loads of all HIV-seropositive individuals, and this number is expected to increase.41 Viral load information is becoming increasingly available. There has been a recent scale-up of point-of-care viral load testing,42 and viral load information is becoming more accessible as a result of the CDC providing supplemental HIV surveillance funding to support the implementation and maintenance of electronic laboratory reporting for all HIV-related test results.43 Concurrently, partner services is already the standard of care for syphilis and HIV control efforts by local Public Health Services, which helps identify large numbers of individuals who are of negative or unknown HIV serostatus. Combining these 2 preexisting public health data sources after inquiring about a patient's social and sexual connections would allow for the calculation of NVL, which could then be used for a public health approach toward HIV-prevention interventions where interventions such as PrEP are focused on HIV-seronegative individuals who have a high NVL. Guidelines for PrEP,44 eg, are still based on individual-level behaviors, which may be inadequate (half of seroconverters in the uConnect cohort were not eligible for PreP according to CDC guidelines, data not shown). A paradigm shift in how we use PrEP that includes characteristics of the network, which could include NVL, is needed. Future studies should test the association between NVL and HIV seroconversion to further validate the metric and advance efforts toward HIV elimination.

ACKNOWLEDGMENTS

The authors thank the uConnect study participants for the time they contributed to this study. The authors also thank staff for the collection of the data as well as Stuart Michaels, Phil Schumm, Lindsay E. Young and Nicola Lancki for their contributions.

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Keywords:

HIV; viral load; MSM; young; social networks

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