Immunodeficiency in Children Starting Antiretroviral Therapy in Low-, Middle-, and High-Income Countries : JAIDS Journal of Acquired Immune Deficiency Syndromes

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Epidemiology and Prevention

Immunodeficiency in Children Starting Antiretroviral Therapy in Low-, Middle-, and High-Income Countries

Koller, Manuel DrSc*; Patel, Kunjal DSc; Chi, Benjamin H. MD; Wools-Kaloustian, Kara MD§; Dicko, Fatoumata MD; Chokephaibulkit, Kulkanya MD; Chimbetete, Cleophas MD#; Avila, Dorita MSc*; Hazra, Rohan MD**; Ayaya, Samual MD††; Leroy, Valeriane MD, PhD‡‡; Truong, Huu Khanh MD§§; Egger, Matthias MD*,‖‖; Davies, Mary-Ann MD, PhD‖‖ for the IeDEA, NISDI, PHACS and IMPAACT 219C studies

Author Information
JAIDS Journal of Acquired Immune Deficiency Syndromes 68(1):p 62-72, January 1, 2015. | DOI: 10.1097/QAI.0000000000000380



Access to combination antiretroviral therapy (cART) has increased dramatically since 2004, with substantial funding from donors and national governments. According to World Health Organization (WHO) estimates, the number of children receiving cART in low- and middle-income countries increased from 71,500 at the end of 2005 to 740,000 in 2013, an increase in coverage among all HIV-infected children from 11% to 23%.1,2 However, in many settings, mortality remains high during the first year of cART, especially among children with advanced disease.3–6

Immunologic status (CD4 cell count or percentage), age, and clinical stage at cART initiation are important prognostic factors for HIV-infected children and WHO guidelines for starting therapy have been based on these criteria.7 A recent prognostic model from Southern Africa estimated that mortality in the first year of treatment in children starting cART with CD4% ≥10% was about half that of children with CD4% <5%.8 Similarly, mortality in children with WHO clinical stage 3/4 was about 40% higher compared with children in stages 1/2, and about 4 times higher in infants compared with children 5–10 years.8

Until recently, WHO guidelines recommended immediate cART regardless of immunologic or clinical thresholds for infants and children aged <2 years and for all children aged 2–5 years with WHO clinical stages 3/4, or CD4 <750 cells per microliter or 25%.7 These guidelines were revised in 2013 to recommend immediate treatment for all children aged <5 years.9 Previous studies indicate that most children in lower income settings do not initiate cART until they have severe immunosuppression. Among 10,875 children who initiated treatment from 2004 to 2010 in Malawi, South Africa, Zambia, and Zimbabwe, most had advanced disease (72% WHO stage 3/4) with low median CD4% (13%).8 Temporal trends in CD4 measures at cART initiation are a useful indicator of the ability of health care systems to identify and treat eligible children in a timely fashion and to respond to changing guidelines. We analyzed these indicators from an international collaboration of treatment programs in sub-Saharan Africa, Asia, Latin America, and North America.


Data Sources

The International epidemiologic Databases to Evaluate AIDS (IeDEA) is a global consortium structured through regional centers to pool data on HIV-infected individuals. The 7 regions included in IeDEA are North America, Caribbean/Central and South America, Asia/Pacific, and 4 regions in sub-Saharan Africa (East Africa, West Africa, Central Africa, and Southern Africa).6,10–14 For the present analysis, we included data from the African and Asia/Pacific regions of IeDEA. In addition, we included North American and Latin American data from the NICHD International Site Development Initiative,15 the Pediatric HIV/AIDS Cohort Study,16 and the International Maternal Pediatric Adolescent AIDS Clinical Trials 219C study.17 Pooling of data and their use in collaborative analyses were approved by local ethics committees and institutional review boards. Participating regional centers sent de-identified data to the University of Bern, Switzerland, where the data were collated and analyzed.

Inclusion Criteria and Definitions

All patients aged <16 years with documented gender and cART start date were included in descriptive analyses of age, gender, and calendar year at cART initiation. For further analyses we excluded data from low or middle-income countries before widespread rollout began in 2003, data from calendar years from any country with <10 children with CD4 measures for that year and countries contributing <50 children with CD4 measures overall after applying the calendar year exclusion criterion. cART was defined as a regimen of ≥3 antiretroviral drugs, typically from 2 drug classes. Baseline CD4 values were defined as those nearest to cART start date, within a window of 6 months before to 1 month after treatment initiation. Countries were grouped according to the World Bank classification of Gross National Income per capita per year in 2010 as low income (LIC) (≤US$1005), lower middle income (LMIC) (US$1006 to 3975), upper middle income (UMIC) (US$3976 to 12,275), and high income (HIC) (≥US$12,276).18 Age groups were <12 months, 12–35 months, 36–59 months, 5–11 years, and 12–15 years. Severe immunodeficiency was defined according to WHO criteria as CD4% <25% (age <12 months), <20% (age 12–35 months), <15% (age 36–59 months), and CD4 count <200 cells per microliter or CD4% <15% (age ≥5 years).19

Descriptive Analyses

Descriptive analyses included all countries and calendar years with any data from 1995 onwards. Analyses were stratified by country, age group, gender, and country income group. CD4 values, age, and calendar year at cART start were summarized as medians with interquartile ranges (IQRs) or percentages.

Multiple Imputation of Missing CD4 Measures

We imputed missing CD4 measures for countries contributing ≥50 children with CD4 measures and calendar years with ≥10 children with CD4 measures. We imputed log of CD4% and count simultaneously using chained equations and predictive mean matching, adjusting for country, year of cART start, continent and national cART coverage, and stratifying by gender, age, and income group. Data on pediatric cART coverage for 2009 were obtained from WHO for low- and middle-income countries.20 We generated 50 imputed data sets and combined these using Rubin's rule.21

Analyses of Temporal Trends in CD4 Measures

We used generalized additive mixed models to analyze temporal trends in CD4 measures in different age and country income groups. We analyzed the proportion of children with severe immunodeficiency, median CD4% (aged <5 years), and median CD4 count (aged ≥5 years). Gender, age group and income group, as well as their interactions were entered as fixed effects. Yearly trends were smoothed by gender, age group, and income group. The data were aggregated by calendar year (3–12 years, depending on country), country (20 countries), gender (2 groups), and age group (5 groups, as defined above) before analysis: each combination of these factors corresponded to a cell in the analysis. For each cell, we calculated the number of children with severe immunodeficiency and the median CD4% and count. Each cell was entered in the model with a weight corresponding to the number of observations it contained divided by the average number of observations in all cells. We modeled the prevalence of severe immunodeficiency using the binomial distribution and a logit link, assuming Gaussian distributions for the error terms of CD4% and count. We used the same modeling technique to model temporal trends in age at cART start in different country income groups, however, did not stratify by age group and restricted to years where all age groups were represented.

In an analysis restricted to low- and middle-income countries with data for the year 2009, we modeled the country-level proportion of patients starting cART with severe immunodeficiency using a generalized linear mixed model. We chose the year 2009 because this was the most recent year where data from most countries were available. We examined the influence of age, gender, income group, and national pediatric cART coverage. These results are presented as adjusted odds ratios (ORs) with 95% confidence intervals (CIs).

We used the data set with imputed data for the main analysis. In sensitivity analyses, we fitted the model to complete data. Analyses were done in Stata 12 (Stata Corporation, College Station, TX) and R version 3.0.2 (R Core Team, Vienna, Austria). The technical appendix provides further details on the multiple imputation and smoothing (see Supplemental Digital Content 1, CD4 results are presented as observed or modeled median (IQR) CD4 count/% and proportion of children with severe immunodeficiency with 95% CI.


Descriptive Analyses

Data of 36,125 children aged <16 years were submitted to the data center. Nine countries with ≤200 children, 7 with 201–1000 children, 7 with 1001–5000 children, and 2 with >5000 children contributed data (Fig. 1). Ten children with missing gender were excluded; hence 36,115 children from 25 countries were included in descriptive analyses. Supplementary Figure S1 (see Supplemental Digital Content 2, shows the inclusion of children in analyses.

Map of countries contributing patients to the collaborative analysis.

The number of children included from each country varied from 30 (Peru) to 11,830 (Zambia) (Table 1). The percentage of girls was 49% overall [range across countries 40% (Senegal) to 54% (Botswana)]. Median age at cART initiation was 5.2 years [range, 10 months (Peru) to 9.1 years (Zimbabwe)]. The median year of cART initiation was 2007 [range, 1998 (United States) to 2008 (Peru, Vietnam, Zambia, and Zimbabwe)]. The percentage of children starting cART with severe immunodeficiency was 57% overall (20,619 children), range, 22% (United States) to 83% (Peru) (Table 2).

Characteristics of 36,115 Children Starting cART by Country and World Bank Income Group
TABLE 2-a CD4:
Cell Count and CD4% at the Start of cART and the Percentage of Children Starting cART With Severe Immunodeficiency by Country and World Bank Income Group
TABLE 2-b CD4:
Cell Count and CD4% at the Start of cART and the Percentage of Children Starting cART With Severe Immunodeficiency by Country and World Bank Income Group

The median (IQR) age of children starting cART was 5.6 years (2.4–9.4) in LIC, 5.3 (2.1–9.6) in LMIC, 4.5 (1.5–8.0) in UMIC, and 6.0 (3.0–10.0) in HIC. The median CD4 count at cART initiation in children aged ≥5 years was 238 cells per microliter in girls and 220 cells per microliter in boys. In LIC, it was 226 cells per microliter (girls) and 206 cells per microliter (boys). Corresponding values were higher in LMIC (246 and 236 cells/μL, respectively) but lower in UMIC countries (191 and 183 cells/μL, respectively). In the United States, the values were 468 and 414 cells per microliter, respectively. Similar patterns were evident for CD4% in children <5 years (Table 2). The percentage of children starting cART with severe immunodeficiency was 57% overall. Compared with LIC (58%), it was slightly lower in LMIC (56%), higher in UMIC (64%), and lower in the United States (22%). Apart from the comparison of age in LIC and HIC, all the above differences were statistically significant (P < 0.05). However, such significant differences are to be expected given the large number of observations.

Multiple Imputation of Missing CD4 Measures

A total of 1409 children were excluded from further analyses, either because they were from Benin, Burkina Faso, India, Botswana, or Peru, with <50 children with CD4 measures (413 children) or from calendar years with <10 children with CD4 measures (996 children). The multiple imputation of missing CD4 measures was thus based on 34,706 children. Compared with 6528 children who had both measures missing, the 28,178 children with either CD4 count or percent measures available at cART initiation were older, more likely to be in WHO stage 1/2 or CDC stage A/B, more likely to have information available on clinical stage, and less likely to be from a LIC (see Table S1, Supplemental Digital Content 3, Both measures were missing in 19% of children overall, 25% in LIC, 18% in LMIC, 17% in UMIC, and 0% in the United States (Table 2). Both measures were available in 31% of children in LIC, 3% in LMIC, 13% in UMIC, and 100% in the United States. Supplementary Figure S2 (see Figure S2, Supplemental Digital Content 4, shows the proportion of children with available CD4 measure by country income and age groups.

CD4 counts were imputed for 3014 (17%) of 17,860 children aged ≥5 years with no CD4 measure and for 4017 (22%) children with only CD4% available. Similarly, CD4% values were imputed for 3514 (21%) of 16,846 children aged <5 years with no CD4 measure and for 6514 (39%) children who had a CD4 count available. Medians of imputed CD4 data (main analysis) and complete cases (sensitivity analysis) were generally similar (Table 2). The CD4 cell counts in UMIC increased somewhat after imputation of missing data, and the percentage of children starting cART with severe immunodeficiency increased in LIC. For children aged ≥5 years, the differences between observed and imputed CD4 values for individual countries ranged from −11 cells per microliter (boys from Mozambique) to +57 cells per microliter (girls from Uganda). For children aged <5 years, the differences ranged from −1% (boys from Kenya) to +4% (boys from Zimbabwe).

Temporal Trends in CD4 Measures

Data from low- and middle-income countries typically spanned the years 2003–2010, whereas data from the United States were available for 1995–2006 only (Table 1). We first fitted models including separate smoothers for each combination of gender, age group, and country income group. Gender did not improve model fit and was therefore removed. The final models included smoothers for each combination of age and country income-group. Figure 2 shows modeled temporal trends in the prevalence of severe immunodeficiency at cART initiation; Figure 3 shows corresponding trends in median CD4 counts (children aged ≥5 years) or CD4% (children <5 years). In LIC, the estimated percentage of children starting cART with severe immunodeficiency (as defined by WHO 2006 criteria) declined from 76% in 2004 to 63% in 2010. Corresponding figures for LMIC were from 77% to 66% and for UMIC from 75% to 58%. In the United States, it decreased from 42% to 19% during 1996–2006 (Fig. 2).

Severe immunodeficiency at the start of combination antiretroviral therapy by age and country income group. Results from generalized additive mixed-effects model based 34,706 children after imputation of missing data. 95% CIs are shown as shaded areas.
Median CD4 cell count in children aged 5 years or older and median CD4% in children below 5 years of age at the start of combination antiretroviral therapy by age and country income group. Results from generalized additive mixed-effects model based on 34,706 children after imputation of missing data. 95% CIs are shown as shaded areas.

In LIC, the median CD4 cell count at cART initiation in children aged ≥5 years increased by 72% from 2004 to 2010, from 144 to 247 cells per microliter. Corresponding increases for LMIC were 20% (115–138 cells/μL) and 52% in UMIC (101–153 cells/μL). The increase from 1996 to 2006 in the United States was 72% (254–398 cells/μL). In children aged <5 years, CD4% increased from 2004 to 2010 from 13% to 17% in LIC, from 11% to 15% in LMIC, and from 13% to 19% in UMIC. In the United States, CD4% increased between 1996 and 2005 from 27% to 32% (Fig. 3). Results of complete case analyses were similar (see Figure S3 and Figure S4, Supplemental Digital Content 5 and 6,

Temporal trends in median age at cART initiation varied between country income groups (see Figure S5, Supplemental Digital Content 7, There was no clear trend in median age at cART initiation in UMIC, whereas there was a decrease over time in LMIC (6.1–3.0 years) and LIC (6.5–4.6 years). In the United States, median age increased from 5.6 to 10.9 years (1996–2006).

Determinants of Starting cART With Severe Immunodeficiency

Table 3 shows the adjusted OR of starting cART with severe immunodeficiency by gender, age group, and income group in 2009 based on 4121 children from 4 LIC (Cambodia, Malawi, Rwanda, and Zimbabwe), 3 LMIC (Indonesia, Vietnam, and Zambia), and 4 UMIC (Brazil, Malaysia, South Africa, Thailand). There was no difference in the probability of starting cART with severe immunodeficiency between genders but the ORs comparing the risk in infants with older children decreased up to age 5–11 years (OR, 0.22; 95% CI: 0.17 to 0.28) but increased in age group 12–15 years (OR, 2.14; 95% CI: 1.51 to 3.04). There was little evidence for a difference between country income groups, or across levels of national pediatric cART coverage. Results were similar in the complete case analysis (see Table S2, Supplemental Digital Content 8,

Individual-Level and Country-Level Adjusted Predictors for Starting cART With Severe Immunodeficiency in 2009


This global analysis of CD4 measures at cART initiation was based on over 35,000 children starting treatment in sub-Saharan Africa, South East Asia, Latin America, and North America. The percentage of children starting cART with severe immunodeficiency was substantially lower in the United States compared with other countries, with only small differences between low-income and middle-income countries. The estimated proportion of children starting cART with severe immunodeficiency decreased everywhere over the study period. In 2010, however, approximately two-thirds of children in low- and middle-income countries still started cART with severe immunodeficiency.

Discussion of Findings in the Light of WHO HIV Treatment Guidelines

Our study confirms previous observations that many children in low- and middle-income countries continue to start cART late.6,8,22–24 In 2010, 70% of children <2 years started cART with severe immunodeficiency despite WHO guidelines recommending early cART regardless of immunologic or clinical thresholds for all children in this age group.7 This may be partly due to delayed country-level implementation of WHO guidelines as well as poor access to early infant diagnosis (EID), slow turn-around time of test results, and limited cART availability for infants and young children.25 There was, however, wide variability in median CD4 values for countries in the same income group. Outside the United States, the proportion of children starting cART with severe immunosuppression was similar across countries with different income levels. This may be due to substantial donor support for cART in LIC, in contrast to middle-income countries where national governments had to provide more finance for cART programs.

Although the median age at cART initiation decreased over time in LIC and LMIC, it increased in the United States, and there was no clear trend in UMIC, although the CIs were wide for all country income groups. Interpreting these trends is complex; the median age at cART initiation depends on the effectiveness of prevention of mother-to-child transmission (PMTCT) programs in reducing numbers of newly infected infants, capacity for EID and early cART, as well as the backlog of older children not yet on therapy, which may be substantial.26,27 For example, the increasing age over time in the United States is likely because effective PMTCT programs had largely eliminated new infant infections, with the few children initiating cART in later years being long-term survivors who had remained relatively healthy without cART.

It is hoped that 2013 guidelines recommending universal cART for all children aged <5 years irrespective of CD4 or clinical stage will accelerate pediatric cART access by simplifying programs to a single recommendation for all children in this age group.9 These recommendations not only expand treatment eligibility but could potentially accelerate treatment initiation even for those who actually do have immunosuppression by removing the requirement for a CD4 measurement and consequent time lag while waiting for results before treatment is started. Changes in CD4 measures at ART initiation may therefore be a useful measure of responsiveness to guideline changes, with targets set for reductions in the proportion of children starting cART with severe immunosuppression.28

Role of Infant and Child Diagnostic Testing

The scale-up of PMTCT programs including antenatal opt-out HIV testing and EID testing may have contributed to gradually higher CD4 cell measures at cART initiation in infants. If more women were aware of their HIV status in pregnancy and enrolled in PMTCT programs with access to EID, there would be increasing likelihood of earlier testing of their HIV-exposed infants. In addition, the scale-up of EID through dried blood spot HIV-PCR testing is encouraging.29–31 However, coverage remains low in many settings and postnatal PMTCT infant follow-up is frequently suboptimal,25,32 with many challenges such as lack of integration of PMTCT, HIV, and child health programs, limited privacy in routine child health clinics, and slow turn-around times of HIV-PCR test results.33,34 HIV-infected older children are also frequently only identified once they have advanced disease, highlighting the importance of integrating provider-initiated HIV serological testing (cheap and easy to perform) at routine child health visits, especially in high prevalence settings.35,36

Poor Access to cART for Infants and Children

Timely diagnosis of pediatric HIV does not necessarily result in timely cART. In national programs in Cambodia, Namibia, Senegal, and Uganda, despite impressive EID scale-up, the proportion of infants identified as infected who subsequently initiated cART was <40% in all countries except Namibia.29 Key reasons for the diagnosis to treatment gap include HIV diagnostic tests and pediatric cART being located at separate sites without robust referral mechanisms between services, challenges with CD4 measurement to determine eligibility including access to tests, turn-around time and interpretation of results, as well as health care worker discomfort with treating children.29 In a review of studies including mostly older children, the proportion of cART eligible children that initiated treatment was as low as 40%.37 Approaches such as decentralization of pediatric cART to maternal and child health and clinics together with task-shifting and health care worker training in pediatric treatment and care may facilitate earlier cART initiation.38

Strengths and Limitations

This is a large pooled individualized patient-level data set from multiple programs across the globe. In contrast to aggregate reporting data, it provides a more nuanced picture of progress toward pediatric cART access in a range of settings. However, we could not examine trends after 2010 because more recent data were not yet available from many sites. This is important as most lower income countries implemented the WHO 2010 recommendation of ART initiation irrespective of disease severity in children aged <2 years in 2011, and until recently, there was limited access to EID.21,31 There was substantial missing data on CD4 measures and clinical stage from low- and middle-income countries, so our estimates of median CD4 values may be biased. The high proportion of missing CD4 and clinical stage data is a concern as, for most of the data collection period, these measures were required to assess cART eligibility; their poor availability may indicate missed opportunities to initiate cART. In this respect, the recent WHO recommendation of cART initiation in all children aged <5 years may improve pediatric cART access by eliminating the requirement for these measures before cART initiation but may also preclude repeating analyses such as this one, making it more difficult to accurately monitor progress in access to cART.8 Data from some countries were limited to a small number of patients from a single clinic and so were excluded from analyses of time trends and predictors of CD4 at cART initiation as they are unlikely to be nationally representative. There were data from only 1 high-income country (United States), with relatively small numbers of children. In addition, only data up to 2005 from the United States could be analyzed precluding comparison with low- and middle-income countries during the major period of scale-up in the latter regions.


Reductions in the proportion of children initiating cART with severe immunosuppression in low- and middle-income countries over time are encouraging but modest. Efforts to improve timely access to pediatric HIV diagnosis and cART should remain a global public health priority.


The authors are grateful to all children, care givers, and data managers involved in the participating cohorts and treatment programs.


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children; antiretroviral; immunodeficiency; CD4; global

Supplemental Digital Content

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