Share this article on:

Household Transmission of 2009 Pandemic Influenza A (H1N1): A Systematic Review and Meta-analysis

Lau, Lincoln L. H.a; Nishiura, Hiroshia,b; Kelly, Heathc; Ip, Dennis K. M.a; Leung, Gabriel M.a; Cowling, Benjamin J.a

doi: 10.1097/EDE.0b013e31825588b8
Infectious Disease

Background: During the 2009 influenza A (H1N1) pandemic, household transmission studies were implemented to better understand the characteristics of the transmission of the novel virus in a confined setting.

Methods: We conducted a systematic review and meta-analysis to assess and summarize the findings of these studies. We identified 27 articles, around half of which reported studies conducted in May and June 2009.

Results: In 13 of the 27 studies (48%) that collected respiratory specimens from household contacts, point estimates of the risk of secondary infection ranged from 3% to 38%, with substantial heterogeneity. Meta-regression analyses revealed that a part of the heterogeneity reflected varying case ascertainment and study designs. The estimates of symptomatic secondary infection risk, based on 20 studies identifying febrile acute respiratory illness among household contacts, also showed substantial variability, with point estimates ranging from 4% to 37%.

Conclusions: Transmission of the 2009 pandemic virus in households appeared to vary among countries and settings, with differences in estimates of the secondary infection risk also partly due to differences in study designs.

Supplemental Digital Content is available in the text.

From the aSchool of Public Health, The University of Hong Kong, Pokfulam, Hong Kong Special Administrative Region, China; bPRESTO, Japan Science and Technology Agency, Saitama, Japan; cVictorian Infectious Diseases Reference Laboratory, North Melbourne, Victoria, Australia.

Submitted 31 August 2011; accepted 6 February 2012; posted 3 May 2012.

This work received financial support from the Harvard Center for Communicable Disease Dynamics from the National Institute of General Medical Sciences (grant no. U54 GM088558), and the Area of Excellence Scheme of the University Grants Committee of Hong Kong (grant no. AoE/M-12/06). HN is supported by the JST PRESTO program. BJC has received research funding from MedImmune Inc. HAK has received funding from CSL Biotherapies. DKMI has received research funding from Roche. The authors reported no other financial interests related to this research.

Supplemental digital content is available through direct URL citations in the HTML and PDF versions of this article ( This content is not peer-reviewed or copy-edited; it is the sole responsibility of the author.

Correspondence: Hiroshi Nishiura, School of Public Health, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Units 624-7, Cyberport 3, Pokfulam, Hong Kong. E-mail:

In 2009, influenza A (H1N1–2009) virus (pH1N1) emerged to cause the first influenza pandemic of the 21st Century.1 Many epidemiologic studies were carried out to characterize the epidemiology of pH1N1 and inform decisions about possible countermeasures. Of particular early interest was the frequency of transmission from confirmed cases to their close contacts. The household, defined as a person or a group of people living in the same residence, provides a strategic setting to track infections among close contacts of cases: one, the denominator is well defined, and two, household contacts can generally be identified and followed with fewer resources than other types of contacts. It is also strategic to monitor transmission in households where up to 30% of influenza virus transmission is believed to occur.2,3

A substantial fraction of influenza infections are asymptomatic or associated with mild disease that does not require medical attention. Epidemiologic studies of severe cases (eg, hospitalized cases) can provide detailed information on the risk factors of death and thus help examine the prognosis and clinical effectiveness of treatments among the severe fraction of cases. However, studies in households can observe the full range of illness associated with influenza, as well as examining transmission in a confined setting.4 In a confined setting, one way to quantify the overall risk of infection (which may be used as a relative measurement of the transmissibility of an influenza virus) is to estimate the proportion of susceptible household contacts of an index case who subsequently become infected.5 The conditional risk of infection in households given exposure to an index case can be estimated overall, or compared among subgroups (eg, children vs. adults), or between persons who did or did not receive specific interventions, such as antiviral prophylaxis.6,7 The clinical onset serial interval (defined as the time from illness onset of an index case to illness onset of a secondary case infected by the index case8) offers insight into the natural history of influenza and is key to interpretation of the early growth of cases using mathematical modeling techniques.9 Estimates of the mean serial interval in households are often regarded as a proxy for the average time between successive host generations of infection in a population,9 although the applicability of household results to other settings is still subject to clarification.

Timely household studies can be highly informative.10 The household secondary infection risk (SIR), more commonly referred to as the secondary attack rate (SAR), represents an overall risk of infection among household contacts for a defined period. Throughout this paper, we use SIR because (1) the household outcome of our interest is not necessarily best referred to as an attack in that many influenza infections are mild, and (2) rate is a misnomer, and the SIR is a measure of risk under certain assumptions5 (mentioned in Methods section later in the text). Here, we report a systematic review of household transmission studies of pH1N1. Our objectives were to review the design and implementation of household studies during the pandemic, to compare and contrast their findings and summarize the epidemiologic characteristics of pH1N1 in households, and to identify important considerations for future household studies of influenza transmission.

Back to Top | Article Outline


This systematic review and meta-analysis was conducted in accordance with the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) statement.11

Back to Top | Article Outline

Search Strategy

Studies containing data on household transmission of the pH1N1 virus were retrieved from the Scopus and Medline (PubMed) electronic databases on 29 June, 2011. We used the following free-text search terms in “All fields”:

  1. “influenza” OR “flu” OR “H1N1*” OR “pH1N1” OR “nH1N1” OR “vH1N1.”
  2. “family” OR “household” OR “house” OR “home.”
  3. “transmission” OR “infection” OR “contagion” OR “spread” OR “attack.”
  4. 1 AND 2 AND 3.

We limited the search to studies published after March 2009 (ie, subsequent to the emergence of pH1N1) through 12 December 2011. Additional relevant studies identified by the authors were manually retrieved from other databases.

Back to Top | Article Outline

Study Selection

All titles identified by the search strategy were independently screened by 2 authors (L.L.H.L. and B.J.C.). Abstracts of potentially relevant titles were then reviewed for eligibility, and articles were selected for closer examination, if a description of household transmission was available. Eligible articles reported a household SIR for pH1N1 or sufficient data to retrieve an SIR, and must have reported data based on ≥5 households. Studies that followed persons only in households in which transmission occurred were also excluded. Multiple reports of the same dataset were assessed, and the most comprehensive report of a study was included.

Back to Top | Article Outline

Ascertainment of Secondary Cases

Household SIRs were calculated as the number of identified cases divided by the number of household contacts. Although not always explicitly mentioned, the estimation of SIRs as an overall conditional risk of infection given exposure involves the following assumptions: (1) household contacts are equally susceptible; (2) SIR is the conditional risk given exposure to the index case(s), and is examined for a reasonable length of time after illness onset in the index case; and (3) the SIR as defined here is a mixture of the risks of infection in households and in the community, and, thus, is regarded as an overall risk of infection among household contacts.5 Household SIRs could be estimated either through identification of pH1N1 virus by virologic testing, by serologic evidence of infection, or based on clinical diagnosis or self-reported signs and symptoms. Virologic methods to confirm pH1N1 infections included reverse transcription polymerase chain reaction (RT-PCR) or viral culture on specimens collected from the respiratory tract. Serologic methods included analysis of paired serological specimens by hemagglutination inhibition or viral neutralization assays, with a 4-fold or greater rise between baseline and convalescence conventionally used to indicate infection. Many studies assessed incidence of febrile acute respiratory illness among household contacts, where the illness was a febrile upper respiratory tract infection mostly defined as the presence of fever plus cough or sore throat (a common surveillance definition of influenza-like illness). In some studies, the definition was extended to include the presence of fever plus one or more of the following symptoms: coryza, shortness of breath, sneezing, rhinorrhea, sore throat, feverishness, arthralgia, myalgia, prostration, or headache. The threshold for body temperature used to classify fever varied from 37.5°C to 38.0°C. Some studies also reported the occurrence of acute respiratory illness among contacts where acute respiratory illness was a broad definition of febrile or afebrile upper respiratory tract infection, typically the presence of 2 or more influenza-related signs or symptoms. To distinguish the estimated SIR by various approaches to ascertainment, we define SIRPCR, SIRFARI, and SIRARI as the SIR ascertained by RT-PCR, febrile acute respiratory illness, and acute respiratory illness, respectively.

Back to Top | Article Outline

Data Extraction

The primary data extracted were the total number of household contacts and infected contacts, according to laboratory or clinical outcome measures. Whenever available, we extracted SIRs stratified by age group, household size, and antiviral use. Children were usually defined as those up to 15 years of age, although the age threshold in some studies differed by 1 or 2 years. We also extracted estimated mean or median serial intervals with 95% confidence intervals, mean household sizes, numbers of households, and index case age distributions, if they were reported. Infections identified in household contacts could potentially be generalizable to all naturally acquired pH1N1 infections (in contrast to, eg, only cases presenting for outpatient medical care). Therefore, data on illness profiles associated with pH1N1 infection were extracted from studies that confirmed infection by laboratory testing, regardless of whether household contacts were symptomatic or asymptomatic. All data were extracted onto a standardized form.

Back to Top | Article Outline

Statistical Analysis

SIRs were stratified according to method of ascertainment (virologic or clinical), and further divided into adult and child age groups when data permitted. Combined estimates of the SIR were based on proportions transformed by logit transformation12,13 and combined using a DerSimonian-Laird random-effects model.14 We assessed statistical heterogeneity by the I 2 statistic, with higher values signifying greater degree of variation.15 Metaregression analyses were conducted using multivariate mixed-effects models,16 and missing data were dealt with using multiple imputation. All analyses were conducted with R version 2.11.1 (R Development Core Team, Vienna, Austria) and the metafor package.17

Back to Top | Article Outline


Of the 903 titles initially identified from the database search, 48 full-length articles were assessed for inclusion, of which 21 were excluded (eTable 1,, and 27 studies were determined to be eligible and included in this systematic review (Fig. 1).18 45 We excluded one study26 because it reanalyzed a subset of study subjects that had been recruited in an earlier study that was already included in the analysis24; we counted only the earlier study when we extracted serological testing results from the follow-up study.26 One article46 reported preliminary analyses of data from the “First Few 100” study in the United Kingdom, and the results of this study were subsequently updated in a more comprehensive publication with a slightly larger dataset.36 We therefore excluded the preliminary report from our systematic review and meta-analysis.

Figure 1

Figure 1

The 27 included articles are summarized in Table 1. Most studies (25/27) identified index cases through various means (eg, recruitment at primary health care providers, surveying specific exposed populations such as schools and camps, follow-up of cases reported to national public health databases, or through general practice sentinel surveillance networks), and then followed up their households for 1–4 weeks to observe transmission. The other 2 studies recruited subjects from cohorts that had been established before observation of household transmission. There was variation in the definition of household and household members or contacts used among the studies that explicitly defined household contacts (eTable 2, Some studies used a traditional definition of household contacts (those who resided with the index), whereas other studies broadened the definition to include close contacts who spent 1 or more nights in the household, or even any exposure of at least 1 hour to the infectious index case in a household setting.

Table 1

Table 1

In 23 of the 27 studies (85%), all index cases were confirmed by RT-PCR, whereas in the other 4 studies, index cases were either clinically confirmed or retrospectively identified through symptom surveys. In 17 (63%) of these studies, households were followed up through telephone, postal, or internet surveys, and the remaining studies involved one or more home visits. Respiratory specimens were collected for virologic testing from household contacts in 13 of the studies (48%), and 5 collected sera from household contacts.

Four studies reported that they were able to capture household transmission from the earliest local confirmed cases of pH1N1 in their country.18,41,46,47 Three studies used active surveillance systems for recruitment,29,41,48 whereas 7 studies recruited index cases and their households following specific local outbreaks in schools or summer camps.18,23,24,28,30,34,42 Most studies were conducted early in the pandemic; 12 studies (44%) did not recruit cases after June 2009 (eFigure 1, Only 7% (2/27) of studies were published before January 2010.

Back to Top | Article Outline

Secondary Infection Risks

Twelve studies collected respiratory specimens from symptomatic or asymptomatic household contacts (or both) for laboratory confirmation of influenza A (H1N1). These studies reported SIRPCR which ranged from 3% to 38%, with a I 2 of 96.5%, indicating substantial heterogeneity (Fig. 2). In 9 of the 12 studies, results were stratified by age, yielding a range of SIRPCR from 6% to 49% [I 2 = 91.1%] in children and 1% to 42% (I 2 = 96.8%) in adults. To identify potential moderators of high levels of heterogeneity observed among studies, we conducted metaregression analysis (Table 2). Studies that collected respiratory specimens from all contacts reported a higher SIRPCR than studies that swabbed only symptomatic contacts. The factors included in the model accounted for 75% of the observed heterogeneity.

Figure 2

Figure 2

Table 2

Table 2

Every study included in this review reported clinical influenza among household contacts. Most (74%; 20/27) reported SIRFARI, when the definition of infection included fever, with point estimates ranging from 3% to 37% [I 2 = 94.7%] (Fig. 3). Age-stratified data in 16/20 studies reported SIRFARI with ranges of 4% to 43% [I 2 = 83.7%] and 3% to 36% [I 2 = 92.0%] for children and adult contacts, respectively. Substantial heterogeneity in SIRFARI was observed overall and after stratifying by age. Metaregression analysis revealed that for studies estimating SIRFARI, only general versus specific outbreaks (ie, sampling from community-wide major epidemic rather than from specific confined setting, such as camp or school clusters) yielded a substantial association with the symptomatic SIR, and the model accounted for 34% of the heterogeneity. Among studies that aimed to collect virologic specimens from all contacts regardless of illness, SIRFARI tended to be lower than SIRPCR estimates for confirmed infection, whereas the reverse was true among studies that aimed to collect virologic specimens only from contacts that reported illness (Fig. 4).

Figure 3

Figure 3

Figure 4

Figure 4

Three studies reported that both SIRPCR and SIRFARI were higher among household contacts of younger index cases,22,25,33 2 studies reported that they were lower with younger index cases,19,29 and one study found no difference by index age.41 Four studies that stratified by sex found no difference in SIRs,27,34,40,41 whereas one study reported female contacts to be at greater risk of infection,24 and another reported that adult women were more likely to transmit pH1N1 to children.36

Eight studies reported SIRARI, with point estimates ranging from 13% to 51% [I 2 = 94.3%] (eFigure 2, Stratified analysis reported ranges of 15% to 55% [I 2 = 86.0%] in children and 10% to 49% [I 2 = 90.6%] in adults.

In addition to the effects of contact and index age on household transmission, some studies analyzed the effects of antiviral treatment and prophylaxis with oseltamivir or zanamivir, vaccination history, and household size. Eleven studies recorded infection rates among household contacts that received antiviral prophylaxis,19,23,24,27,28,32 34,36,44,46 but only one study reported the prophylaxis group to be more susceptible to pH1N1 (eFigure 3, One study reported seasonal influenza vaccination history to have no effect on the SIR,45 whereas 3 studies24,30,35 reported elevated SIRs among people who had been vaccinated for seasonal influenza. The SIR was variously observed to increase with household size25,30,35,39 or not to be associated with household size.19,24,27,29,33 In one study with a broader definition of household contacts (eTable 2,, the SIR decreased in larger households.20

Back to Top | Article Outline

Serial Intervals

Among the 27 included studies, 18 (67%) reported either the mean or median household serial interval, and 8 reported both (Fig. 5). Mean serial intervals ranged from 2.6 to 3.9 days, whereas median serial intervals ranged from 2.0 to 4.0 days. Of the 26 point estimates of the serial interval, 20 (77%) fell within the range 2.8–3.5 days.

Figure 5

Figure 5

Back to Top | Article Outline

Illness in Household Contacts With Confirmed pH1N1 Infection

The clinical signs and symptoms associated with confirmed pH1N1 infection among household contacts are summarized in Table 3 from 3 studies that collected respiratory specimens from household contacts, regardless of reported illness. Cough was the most commonly reported symptom, and fever was reported in approximately 60% of the confirmed cases. Two studies reported asymptomatic fractions among virologically confirmed cases to be 11% and 7%,22,41 and when cases under antiviral prophylaxis were included, the asymptomatic fraction was 20%.41 One study reported a subclinical fraction (9%),22 and the other study similarly reported that 9% of household contacts with serologic evidence of infection remained asymptomatic.35 One study that reported only serological data found a crude asymptomatic fraction of 25%.26 Two studies reported the proportion of household contacts with various clinical signs, symptoms, and syndromes that were confirmed with pH1N1 (eTable 3,

Table 3

Table 3

Back to Top | Article Outline

Serologic Findings

Serologic data on household contacts were available from 5 studies.21,22,26,35,40 Two studies reported SIRs based solely on serology to be 20% and 27%.21,26 In addition to using of serology to identify asymptomatic infections,35 2 studies used serology and RT-PCR results in combination to estimate pH1N1 SIRs.35,40 One study reported no evidence of a protective effect for subjects with elevated baseline antibody titer levels against RT-PCR-confirmed infection.22

Back to Top | Article Outline


During the 2009 pandemic, household studies were conducted in many countries to improve understanding of the epidemiologic characteristics of the novel pH1N1 virus in a specific community setting. We described the design of household transmission studies conducted during the pandemic, and we compared the findings of the studies, including the household SIR, the household serial interval, and the symptom profiles and the asymptomatic fraction in household contacts. Among these, the SIR and household serial interval are relatively imprecise in that they are influenced by transmissions both in household and community settings, as well as preexisting immunity among contacts. We therefore conducted metaregression analysis to identify potential factors associated with higher or lower household SIRs (Table 2).

There were substantial heterogeneities in estimated SIRs from the various studies, with point estimates of the SIR based on RT-PCR–confirmed secondary cases ranging from 3% to 38% (Fig. 2). Estimates were similarly heterogeneous when based on febrile acute respiratory illness (Fig. 3) and acute respiratory illness (eFigure 2, The intrinsic transmissibility of the pH1N1 virus is not thought to have varied substantially in different countries; indeed, a recent review identified similarity in the estimates of the reproduction number from a range of studies.9 A review of serologic studies also found similar estimates of cumulative incidence of infection over the first pH1N1 wave in several countries.49

A number of factors may have led to the observed differences in estimated household SIRs. Metaregression analyses revealed that rigorous case ascertainment with RT-PCR testing for all contacts (including asymptomatic contacts), elevated the SIRPCR, whereas the SIRFARI was unaffected (Table 2, Fig. 4). Although rigorous testing undoubtedly increases the cost, our results indicate that studies that tested all household contacts by RT-PCR, regardless of illness, identified more infections. Studies that test only symptomatic contacts will not identify all infected contacts, nor will they achieve a timely collection of specimens within 3 days of onset (when RT-PCR sensitivity is highest50). It might be expected that studies with longer durations of follow-up would pick up not only those transmissions within households but also those from the community; our findings were consistent with increases in SIRPCR and SIRFARI with longer follow-up.

The highest SIRs were observed in Chile,37 Australia,29 and Canada.35,39 Among these, 2 studies with differing SIRs (estimated SIRPCR of 33% and 15%) were reported from Victoria, Australia at similar times.29,44 The study with the larger SIR estimate recruited subjects by 31 August 2009, and the other ended on 3 June 2009; the proportion of child index cases (≥5 years of age) was 86% in the study with SIRPCR = 15%, compared with 37% in the other study. These are consistent with our findings from metaregression (Table 2); the smaller SIRPCR in studies with a greater proportion of child index cases may also suggest case ascertainment bias. The Chilean and Canadian studies enrolled households during peak periods of pH1N1 activity, and household contacts were followed up for 2 weeks37,39 and 3–4 weeks,35 potentially increasing the risk of misclassifying infections from the community or household tertiary cases as household secondary cases.

In comparison, studies that report interpandemic influenza transmission in households have also reported widely varying SIRs, from 7% to 31%.22,47,51 55 It is likely that factors that led to the significant variation and heterogeneity among the studies in this review of the SIR of pH1N1 also affected the SIR of interpandemic influenza. Only 3 studies directly compared the household transmission of interpandemic and pandemic influenza concurrently during a single season in a single population, and each reported comparable SIRs between interpandemic and pandemic strains.22,31,40 One study that was excluded from our review also reported similar secondary-infection risks for interpandemic and pandemic influenza based on serologic evidence from a cohort study in 2008–2009, explicitly estimating the risks of infections directly caused by household index cases.56 The variations in SIRs for both pH1N1 and interpandemic influenza highlight a critical need to formulate guidelines for conducting household studies of influenza so that we can gain more explicit insights into the natural history as well as the transmission within households.

Household serial interval estimates were reported in 18 of the 27 studies (67%) included in our review, with most point estimates falling in the range 2.8–3.5 days (Fig. 5). Correction for multiple chains of transmission (eg, tertiary cases) could reduce serial interval estimates and shorten the estimated mean to 2.5 days.9 The household serial interval is not a biologic constant but instead reflects a combination of the infectivity profile of index cases, contact patterns within households, transmission dynamics in the community, and incubation period—and these may vary in different settings and by individual characteristics such as age.57 59 Although estimates of the household serial interval have been used to infer the reproduction number from exponential growth rate of cases,60 further studies are needed to estimate the serial interval in various settings. For example, one recent study in the United States estimated that the serial interval of pH1N1 in schools had a mean of just 1.1 days.57

Some household studies permitted estimation of the fraction of virologically confirmed pH1N1 infections with asymptomatic illness at 7%–11%, and the profile of signs and symptoms associated with pH1N1 infection (Table 3). Estimation of the asymptomatic fraction was achieved by studies that collected specimens from contacts regardless of the presence or absence of symptoms.22,35,40,41,43 Only 5 of the 27 studies included in this review reported serologic data.21,22,26,35,40 The inclusion of serology can provide additional information on asymptomatic infections and on the degree of protection associated with higher baseline humoral antibody titers. There is currently no consensus on the definition of asymptomatic infections versus subclinical infections. The proportion of pH1N1 infections associated with afebrile illness could be a reasonable definition of the subclinical fraction, with estimates ranging from 33% to 47% (Table 3). Only a small fraction of confirmed infections were completely asymptomatic.22,26,35,41

Two major technical problems have yet to be solved regarding the analysis of data from household transmission studies. The first is the unobservable nature of infection events. In many studies, household follow-up was truncated at 7–9 days after illness onset of the index case, after which little primary household transmission occurs.61 Although not explicitly mentioned, the cut-off point should be set at a reasonable length to exclude tertiary cases and those acquiring infection in the community (based on the right tail of the serial interval distribution). Except for one study,20 the reviewed studies did not explicitly address decomposition of secondary, tertiary, and community infections when estimating the SIR. However, 2 other studies used viral sequencing to confirm homology between the strains infecting the index cases and corresponding secondary cases in households.35,62 Given that the larger SIRs and longer mean serial interval in some studies35,37 are suggestive of the presence of chains of transmission or community infections and consequent overestimation of the SIR, it is important to try to identify transmissions that occur only within households. Although several statistical methods are available to address this point at least partially (using either SIR stratified by household size or observed serial interval distribution59,63), those datasets were unfortunately fairly scarce, and irregular timing of observation during the course of an epidemic has made it difficult to remove the coprimary cases from the observed serial intervals. Furthermore, considering the dependent nature of household and community infection risks,64 we refrained from imposing strong epidemiologic assumptions to build a simplistic statistical model, and also from decomposing the observed data into those attributable to transmissions in the household and community. To address these issues, influence of household study characteristics on the estimate of SIR (including the length of follow-up and the timing of observation) were examined instead, demonstrating that the study design—most notably case ascertainment—was an important source of heterogeneity (Table 2). In particular, our meta-analysis has demonstrated that household studies can provide invaluable data on influenza infection; in studies that used febrile illness reports, the resulting estimates of the SIR could underestimate the true SIR (Fig. 4) because a substantial fraction of influenza infections are not associated with febrile illness (Table 3).

The second technical problem is the lack of an ideal approach to recruitment and follow-up of households during the course of an epidemic. Studies conducted during the early stages of the pandemic can provide timely estimates of epidemiologic characteristics, such as the SIR and serial interval, but the community risk of infection varies throughout the course of the epidemic, and the risk of infection within the household could be influenced by many factors, such as changing contact behavior on diagnosis. In one study, households recruited were quarantined and advised to remain at home; in such situations, there could be a higher degree of household contact leading to elevated SIRs.29 However, sampling households only around the peak period of the pandemic could lead to confusion of community infections as secondary cases from within the household, as well as to inclusion of some contacts that have already been infected and are immune. Furthermore, the sources and characteristics of index cases may affect subsequent transmission dynamics as discussed earlier. All these reservations likely apply equally to household studies of interpandemic influenza in households.

Based on our review, we have formulated some recommendations for household transmission study protocols for future studies of pandemic and interpandemic influenza. First, although many studies were conducted within a few months of the initial World Health Organization global pandemic alert in April 2009, other studies were delayed by requirements for protocol development, ethical approval, and funding. Some of the earliest studies were conducted as part of containment measures or routine public health investigations, and these studies often had the most haphazard approaches to recruitment and follow-up of households. The First Few 100 study conducted in the United Kingdom36 provides an excellent model of a household transmission study that was prepared in advance of the pandemic with a detailed protocol, relevant approvals, and funding in place before the pandemic.

Second, laboratory outcome measures are preferable in community-based studies of influenza because many other cocirculating pathogens are associated with upper respiratory tract infections.65 Febrile acute respiratory infections among contacts provided fairly specific criteria for confirmed pH1N1 infection, and estimates based on febrile acute respiratory infections could be corrected for the fraction of infections developing such illness to provide more reasonable estimates of the SIR. Given the technical issue discussed earlier regarding the direct interpretation of point estimates of overall SIRs and the heterogeneity reported in our meta-analysis (Figs. 2, 3), the most important information provided by household transmission studies may be on differences in infectivity and susceptibility by age, and the effects of specific interventions, such as antiviral use. Household SIRs have been used to provide these estimates in the literature because the exposure of household contacts to a single index case permits fairly straightforward analysis.66

Third, it must be remembered that the household SIR is theoretically defined to reflect the risk of infection among “susceptible” contacts,5 whereas many older adults are likely to have been partially or fully immune to pH1N1.67 Inclusion of serology in household studies could provide information on humoral immunity. With adequate laboratory capacity, other correlates of protection, such as cell-mediated and mucosal immunity, can be assessed through collection of whole blood and nasal washes.

Finally, there was considerable uncertainty in the early stages of the pandemic regarding the fraction of infections that were asymptomatic or subclinical. Along with well-designed prospective symptom diaries, collection of acute and convalescent serology from household contacts in household transmission studies could provide key information on asymptomatic cases, which is essential to interpreting epidemic curves of symptomatic cases and forecasting the course of the pandemic. One potential limiting factor, however, is the availability of validated serologic assays early in the next pandemic.

Household transmission studies can provide important information on influenza epidemiology. However, our review suggests that interpretation and comparison of estimates of the SIR from individual studies are substantially affected by differential diagnostic methods and case ascertainment. Furthermore, the unbiased risk of household secondary infection is only approximated by the crude household SIR, and it remains technically challenging to estimate the fraction of secondary cases that were directly infected by the index case. By building a consensus on the appropriate approaches to studying transmission in households (via, eg, common survey protocols), it is likely that household transmission studies could be greatly improved and provide valuable insights into the epidemiology of pandemic and interpandemic influenza.

Back to Top | Article Outline


1. Dawood FS, Jain S, Finelli L, et al.. Emergence of a novel swine-origin influenza A (H1N1) virus in humans. N Engl J Med. 2009;360:2605–2615.
2. Chao DL, Halloran ME, Obenchain VJ, Longini IM Jr. FluTE. A publicly available stochastic influenza epidemic simulation model. PLoS Comput Biol. 2010;6:e1000656.
3. Ferguson NM, Cummings DA, Fraser C, Cajka JC, Cooley PC, Burke DS. Strategies for mitigating an influenza pandemic. Nature. 2006;442:448–452.
4. Monto AS. Studies of the community and family: acute respiratory illness and infection. Epidemiol Rev. 1994;16:351–373.
5. Halloran ME. Secondary attack rate. Encyclopedia of Biostatistics. Wiley, New York: 2005.
6. Glezen WP. Emerging infections: pandemic influenza. Epidemiol Rev. 1996;18:64–76.
7. Halloran ME, Longini IM Jr, Struchiner J. Design and Analysis of Vaccine Studies (Statistics for Biology and Health). New York: Springer; 2009.
8. Fine PE. The interval between successive cases of an infectious disease. Am J Epidemiol. 2003;158:1039–1047.
9. Boelle PY, Ansart S, Cori A, Valleron AJ. Transmission parameters of the A/H1N1 (2009) influenza virus pandemic: a review. Influenza Other Respi Viruses. 2011;5:306–316.
10. Schuchat A, Bell BP, Redd SC. The science behind preparing and responding to pandemic influenza: the lessons and limits of science. Clin Infect Dis. 2011;52(Suppl 1):S8–S12.
11. Moher D, Liberati A, Tetzlaff J, Altman DG. Preferred reporting items for systematic reviews and meta-analyses: the PRISMA statement. PLoS Med. 2009;6:e1000097.
12. Miller JJ. The inverse of the Freeman-Tukey double arcsine transformation. Am Stat. 1978;32:138.
13. Freeman MF, Tukey JW. Transformation related to the angular and the square root. Ann Math Statist. 1950;21:607–611.
14. Laird NM, Mosteller F. Some statistical methods for combining experimental results. Int J Technol Assess Health Care. 1990;6:5–30.
15. Higgins JP, Thompson SG. Quantifying heterogeneity in a meta-analysis. Stat Med. 2002;21:1539–1558.
16. Viechtbauer W. Conducting Meta-Analyses in R with the metafor Package. J Stat Software. 2010;36:1–48.
17. Metafor: Meta-analysis Package for R [computer program]. Version 1.6–0 2011.
18. Calatayud L, Kurkela S, Neave PE, et al.. Pandemic (H1N1) 2009 virus outbreak in a school in London, April-May 2009: an observational study. Epidemiol Infect. 2010;138:183–191.
19. Carcione D, Giele CM, Goggin LS, et al.. Secondary attack rate of pandemic influenza A (H1N1) 2009 in Western Australian households, 29 May-7 August 2009. Euro Surveill. 2011;16.
20. Cauchemez S, Donnelly CA, Reed C, et al.. Household transmission of 2009 pandemic influenza A (H1N1) virus in the United States. N Engl J Med. 2009;361:2619–2627.
21. Chang LY, Chen WH, Lu CY, et al.. Household transmission of pandemic (H1N1) 2009 virus, Taiwan. Emerg Infect Dis. 2011;17:1928–1931.
22. Cowling BJ, Chan KH, Fang VJ, et al.. Comparative epidemiology of pandemic and seasonal influenza A in households. N Engl J Med. 2010;362:2175–2184.
23. Doyle TJ, Hopkins RS. Low secondary transmission of 2009 pandemic influenza A (H1N1) in households following an outbreak at a summer camp: relationship to timing of exposure. Epidemiol Infect. 2011;139:45–51.
24. France AM, Jackson M, Schrag S, et al.. Household transmission of 2009 influenza A (H1N1) virus after a school-based outbreak in New York City, April-May 2009. J Infect Dis. 2010;201:984–992.
25. Goldstein E, Cowling BJ, O'Hagan JJ, et al.. Oseltamivir for treatment and prevention of pandemic influenza A/H1N1 virus infection in households, Milwaukee, 2009. BMC Infect Dis. 2010;10:211.
26. Jackson ML, France AM, Hancock K, et al.. Serologically confirmed household transmission of 2009 pandemic influenza A (H1N1) virus during the first pandemic wave–New York City, April-May 2009. Clin Infect Dis. 2011;53:455–462.
27. Komiya N, Gu Y, Kamiya H, et al.. Household transmission of pandemic 2009 influenza A (H1N1) virus in Osaka, Japan in May 2009. J Infect. 2010;61:284–288.
28. Leung YH, Li MP, Chuang SK. A school outbreak of pandemic (H1N1) 2009 infection: assessment of secondary household transmission and the protective role of oseltamivir. Epidemiol Infect. 2011;139:41–44.
29. Looker C, Carville K, Grant K, Kelly H. Influenza A (H1N1) in Victoria, Australia: a community case series and analysis of household transmission. PLoS One. 2010;5:e13702
30. Loustalot F, Silk BJ, Gaither A, et al.. Household transmission of 2009 pandemic influenza A (H1N1) and nonpharmaceutical interventions among households of high school students in San Antonio, Texas. Clin Infect Dis. 2011;52(Suppl 1):S146–S153.
31. Mohamed AG, Binsaeed AA, Al-Habib H, Al-Saif H. Communicability of H1N1 and seasonal influenza among household contacts of cases in large families. Influenza Other Respi Viruses. 2011 (In press).
32. Morgan OW, Parks S, Shim T, et al.. Household transmission of pandemic (H1N1) 2009, San Antonio, Texas, USA, April-May 2009. Emerg Infect Dis. 2010;16:631–637.
33. Nishiura H, Oshitani H. Household transmission of influenza (H1N1–2009) in Japan: age-specificity and reduction of household transmission risk by zanamivir treatment. J Int Med Res. 2011;39:619–628.
34. Odaira F, Takahashi H, Toyokawa T, et al.. Assessment of secondary attack rate and effectiveness of antiviral prophylaxis among household contacts in an influenza A(H1N1)v outbreak in Kobe, Japan, May-June 2009. Euro Surveill. 2009;14.
35. Papenburg J, Baz M, Hamelin ME, et al.. Household transmission of the 2009 pandemic A/H1N1 influenza virus: elevated laboratory-confirmed secondary attack rates and evidence of asymptomatic infections. Clin Infect Dis. 2010;51:1033–1041.
36. Pebody RG, Harris R, Kafatos G, et al.. Use of antiviral drugs to reduce household transmission of pandemic (H1N1) 2009, United Kingdom. Emerg Infect Dis. 2011;17:990–999.
37. Pedroni E, Garcia M, Espinola V, et al.. Outbreak of 2009 pandemic influenza A (H1N1), Los Lagos, Chile, April-June 2009. Euro Surveill. 2010;15.
38. Savage R, Whelan M, Johnson I, et al.. Assessing secondary attack rates among household contacts at the beginning of the influenza A (H1N1) pandemic in Ontario, Canada, April-June 2009: a prospective, observational study. BMC Public Health. 2011;11:234.
39. Sikora C, Fan S, Golonka R, et al.. Transmission of pandemic influenza A (H1N1) 2009 within households: Edmonton, Canada. J Clin Virol. 2010;49:90–93.
40. Simmerman JM, Suntarattiwong P, Levy J, et al.. Findings from a household randomized controlled trial of hand washing and face masks to reduce influenza transmission in Bangkok, Thailand. Influenza Other Respi Viruses. 2011;5:256–267.
41. Suess T, Buchholz U, Dupke S, et al.. Shedding and transmission of novel influenza virus A/H1N1 infection in households–Germany, 2009. Am J Epidemiol. 2010;171:1157–1164.
42. Sugimoto JD, Borse NN, Ta ML, et al.. The effect of age on transmission of 2009 pandemic influenza A (H1N1) in a camp and associated households. Epidemiol. 2011;22:180–187.
43. van Boven M, Donker T, van der Lubben M, et al.. Transmission of novel influenza A (H1N1) in households with post-exposure antiviral prophylaxis. PLoS One. 2010;5:e11442.
44. van Gemert C, Hellard M, McBryde ES, et al.. Intrahousehold transmission of pandemic (H1N1) 2009 virus, Victoria, Australia. Emerg Infect Dis. 2011;17:1599–1607.
45. Carcione D, Giele C, Goggin LS, et al.. Association between 2009 seasonal influenza vaccine and influenza-like illness during the 2009 pandemic: preliminary results of a large household transmission study in Western Australia. Euro Surveill. 2010;15.
46. Ghani AC, Baguelin M, Griffin J, et al.. The early transmission dynamics of H1N1pdm influenza in the United Kingdom. PLoS Curr Influenza. 2009;1:RRN1130.
47. Yang Y, Sugimoto JD, Halloran ME, et al.. The transmissibility and control of pandemic influenza A (H1N1) virus. Science. 2009;326:729–733.
48. Lee DH, Kim CW, Kim JH, et al.. Risk factors for laboratory-confirmed household transmission of pandemic H1N1 2009 infection. Am J Infect Control. 2010;38:e43–e45.
49. Kelly H, Peck HA, Laurie KL, Wu P, Nishiura H, Cowling BJ. The age-specific cumulative incidence of infection with pandemic influenza H1N1 2009 was similar in various countries prior to vaccination. PLoS One. 2011;6:e21828.
50. Klick B, Leung GM, Cowling BJ. Optimal design of studies of influenza transmission in households. I: Case-ascertained studies. Epidemiol Infect. 2012;140:106–114.
51. Cowling BJ, Chan KH, Fang VJ, et al.. Facemasks and hand hygiene to prevent influenza transmission in households: a cluster randomized trial. Ann Intern Med. 2009;151:437–446.
52. Hayden FG, Belshe R, Villanueva C, et al.. Management of influenza in households: a prospective, randomized comparison of oseltamivir treatment with or without postexposure prophylaxis. J Infect Dis. 2004;189:440–449.
53. Hayden FG, Gubareva LV, Monto AS, et al.. Inhaled zanamivir for the prevention of influenza in families. Zanamivir Family Study Group. N Engl J Med. 2000;343:1282–1289.
54. Monto AS, Pichichero ME, Blanckenberg SJ, et al.. Zanamivir prophylaxis: an effective strategy for the prevention of influenza types A and B within households. J Infect Dis. 2002;186:1582–1588.
55. Welliver R, Monto AS, Carewicz O, et al.. Effectiveness of oseltamivir in preventing influenza in household contacts: a randomized controlled trial. JAMA. 2001;285:748–754.
56. Klick B, Nishiura H, Ng S, et al.. Transmissibility of seasonal and pandemic influenza in a cohort of households in Hong Kong in 2009. Epidemiology. 2011;22:793–796.
57. Cauchemez S, Bhattarai A, Marchbanks TL, et al.. Role of social networks in shaping disease transmission during a community outbreak of 2009 H1N1 pandemic influenza. Proc Natl Acad Sci U S A. 2011;108:2825–2830.
58. Cowling BJ, Fang VJ, Riley S, Malik Peiris JS, Leung GM. Estimation of the serial interval of influenza. Epidemiology. 2009;20:344–347.
59. Klinkenberg D, Nishiura H. The correlation between infectivity and incubation period of measles, estimated from households with two cases. J Theor Biol. 2011;284:52–60.
60. Wallinga J, Lipsitch M. How generation intervals shape the relationship between growth rates and reproductive numbers. Proc Biol Sci. 2007;274:599–604.
61. Dingle JH, Badge GF, W.S. J. Illness in the Home. A Study of 25,000 Illnesses in a Group of Cleveland Families. Cleveland: The Press of Western Reserve University; 1964.
62. Poon LL, Chan KH, Chu DKW, et al.. Viral genetic sequence variations in pandemic H1N1/2009 and seasonal H3N2 influenza viruses within an individual, a household and a community. J Clin Virol. 2011;52:146–150.
63. Longini IM Jr, Koopman JS. Household and community transmission parameters from final distributions of infections in households. Biometrics. 1982;38:115–126.
64. Ball F, Mollison D, Scalia-Tomba G. Epidemics with two levels of mixing. Ann App Prob. 1997;7:46–89.
65. Schnepf N, Resche-Rigon M, Chaillon A, et al.. High burden of non-influenza viruses in influenza-like illness in the early weeks of H1N1v epidemic in France. PLoS One. 2011;6:e23514.
66. Halloran ME, Preziosi MP, Chu H. Estimating vaccine efficacy from secondary attack rates. J Am Stat Assoc. 2003;98:38–46.
67. Hancock K, Veguilla V, Lu X, et al.. Cross-reactive antibody responses to the 2009 pandemic H1N1 influenza virus. N Engl J Med. 2009;361:1945–1952.
Back to Top | Article Outline


We thank Mark Simmerman and Dale Carcione for providing detailed breakdowns of the data on pH1N1 transmission from studies in Bangkok and Australia, respectively. We thank Richard Pebody for clarification on the data included in the series of publications based on the First Few 100 study in the United Kingdom. We thank Vicky Fang for technical assistance, and Katie Glass, Geoff Mercer, and Peter Horby for helpful discussions.

© 2012 Lippincott Williams & Wilkins, Inc.