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Spindle Cell Tumors With RET Gene Fusions Exhibit a Morphologic Spectrum Akin to Tumors With NTRK Gene Fusions

Antonescu, Cristina R. MD*; Dickson, Brendan C. MD; Swanson, David BSc; Zhang, Lei MD*; Sung, Yun-Shao BSc*; Kao, Yu-Chien MD; Chang, Wei-Chin MD§; Ran, Leili PhD; Pappo, Alberto MD; Bahrami, Armita MD#; Chi, Ping MD, PhD; Fletcher, Christopher D. MD**

The American Journal of Surgical Pathology: October 2019 - Volume 43 - Issue 10 - p 1384–1391
doi: 10.1097/PAS.0000000000001297
Original Articles
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A major breakthrough in the classification of soft tissue tumors has been the recent identification of NTRK-fusion related neoplasms which are amenable to highly effective targeted therapies. Despite these therapeutic opportunities, diagnostic challenges have emerged in recognizing tumors characterized by protein kinase fusions, as they are associated with a wide morphologic spectrum, variable risk of malignancy and a rather nonspecific immunoprofile. As such, NTRK-related fusions may occur in infantile fibrosarcoma, lipofibromatosis-like neural tumors (LPF-NTs), tumors resembling malignant peripheral nerve sheath tumors, etc. Triggered by an index case resembling LPF-NT but harboring RET gene rearrangement, we investigated our files for cases showing RET gene abnormalities to establish their clinicopathologic features. Tumors were tested with a combination of targeted RNA sequencing and fluorescence in situ hybridization methods. Six cases with RET gene rearrangements were identified, all except 1 occurred in children, including 4 infants. Their morphologic spectrum was quite diverse, but closely reproduced the phenotype of NTRKfusion-positive tumors, including LPF-NTs (n=3), infantile fibrosarcoma-like tumor (n=2) and malignant peripheral nerve sheath tumor-like (n=1). Three cases showed coexpression of S100 and CD34, whereas the remaining 3 had a nonspecific immunoprofile. The tumors ranged morphologically and clinically from benign to highly malignant. None of the LPF-NT cases recurred, whereas 2 patients with malignant histology had a highly aggressive course with distant metastases to lung and other viscera. By targeted RNA sequencing these tumors harbored RET fusions with an identical break in exon 12, which retains the tyrosine kinase domain in the fusion oncoprotein and involving various gene partners (CLIP2, CCDC6, SPECC1L, MYH10, and NCOA4). Our results suggest that RET fusion-positive neoplasms share a similar phenotypic spectrum with the NTRK-positive tumors, displaying either fibroblastic or neural-like differentiation, and spanning a wide spectrum of clinical behavior. These findings open new avenues for targeted therapy with RET inhibitors currently available in clinical trials.

*Department of Pathology

Department of Medicine, Human Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY

Department of Pathology & Laboratory Medicine, Mount Sinai Hospital, Toronto, ON, Canada

Department of Pathology, Shuang Ho Hospital, Taipei Medical University

§Department of Pathology, MacKay Memorial Hospital, Taipei, Taiwan

Departments of Pediatrics

#Pathology, St Jude Children’s Research Hospital, Memphis, TN

**Department of Pathology, Brigham and Women’s Hospital, Harvard Medical School, Boston, MA

Conflicts of Interest and Source of Funding: Supported in part by: P50 CA 140146-01 (C.R.A.), P50 CA217694 (C.R.A.), P30 CA008748, Cycle for Survival (C.R.A.), Kristin Ann Carr Foundation (C.R.A.). The authors have disclosed that they have no significant relationships with, or financial interest in, any commercial companies pertaining to this article. The authors have no conflicts of interest to disclose.

Correspondence: Cristina R. Antonescu, MD, Memorial Sloan Kettering Cancer Center, 1275 York Avenue, New York, NY 10021 (e-mail: antonesc@mskcc.org).

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