Secondary Logo

Journal Logo


Cholangiopathy After Severe COVID-19: Clinical Features and Prognostic Implications

Faruqui, Saamia MS, MD1; Okoli, Fidelis C. MD1; Olsen, Sonja K. MD1; Feldman, David M. MD1; Kalia, Harmit S. DO1; Park, James S. MD1; Stanca, Carmen M. MD1; Figueroa Diaz, Viviana MD1; Yuan, Sarah MPH1; Dagher, Nabil N. MD2; Sarkar, Suparna A. MD3; Theise, Neil D. MD3; Kim, Sooah MD4; Shanbhogue, Krishna MD4; Jacobson, Ira M. MD, FACG1

Author Information
The American Journal of Gastroenterology: July 2021 - Volume 116 - Issue 7 - p 1414-1425
doi: 10.14309/ajg.0000000000001264
  • Free



In December 2019, a severe viral respiratory illness known as coronavirus disease 2019 (COVID-19), caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), emerged in Wuhan, China. The disease was designated a pandemic by the World Health Organization. At the time of submission, COVID-19 infection was documented to have occurred in more than 109 million people with more than 2.4 million deaths as of February 15, 2021 (1). In the United States alone, there have been more than 27.6 million cases and more than 486,000 deaths. Risk factors for death, or severe illness, from COVID-19 include older age and comorbid conditions such as obesity, diabetes, and hypertension. This dramatic spread of COVID-19 has led to successive waves of sick patients that have overwhelmed hospital and healthcare systems more broadly (2). The clinical features of COVID-19 have featured pneumonia as a defining feature of severe disease, but symptoms and complications are remarkably diverse, and the virus has proven capable to affect multiple organ systems. Hypercoagulability, with potentially severe or fatal cardiovascular, cerebrovascular, and other thrombotic complications, has been recognized as an alarmingly common feature of the disease.

COVID-19 is frequently associated with abnormal liver tests, with no disease-specific lesions on biopsy. The incidence of elevated serum liver biochemistries in hospitalized patients ranges from 14% to 58%, with the degree of elevations ranging from mild to severe (3). In the AGA Institute's large systematic review and meta-analysis, liver abnormalities were seen more frequently in US patients as compared to patients from other parts of the world (4). The preponderance of findings has focused on serum aspartate aminotransferase (AST) and alanine aminotransferase (ALT) elevations, with mild elevations of liver tests (1–2 × upper limit of normal [ULN]) more often seen as compared to more severe elevations (>2 × ULN) (4–6). In 1 retrospective observational cohort study, many hospitalized patients had liver function test abnormalities on admission: 66.9% AST, 41.6% ALT, 13.5% alkaline phosphatase (ALP), 4.3% total bilirubin, and 56.7% albumin (7). These liver test patterns have been presumed to reflect primarily hepatocellular injury. Of note, this study examined laboratory values during hospitalization after initial diagnosis of SARS-CoV-2 infection, and 20% of patients had abnormal liver tests before hospitalization. In many studies, abnormal liver tests during hospitalization have correlated with disease severity (3,5,7,8). One US study of more than 2000 patients focusing on ALT elevations and their correlation with disease severity highlighted the rarity of cholestasis (5).

Although abundant literature has reported on the course of severe COVID-19, there are also increasing reports on sequelae of COVID-19. The phrase “long-haulers” has been applied to individuals who have had recovery from acute illness but have persistent symptoms and complications, including long-standing respiratory, cardiac, neurologic, and psychiatric effects (9–11).

We describe a syndrome in patients recovering from severe COVID-19 characterized by elevations in liver tests, most prominently including marked elevations in serum ALP and inflammation of the biliary tract on imaging, frequently with strictures similar to secondary sclerosing cholangitis (SSC) as previously described in critically ill patients (12). This syndrome seems to have important adverse consequences for patient recovery and may lead to long-term morbidity, need for liver transplantation, or mortality after other manifestations of COVID-19 have improved.


We included adult patients (aged 18 years and older) with severe COVID-19 admitted to NYU Langone Tisch Hospital from March 1, 2020, to August 15, 2020, on whom the hepatology service was consulted at some point in their course for cholestatic injury characterized by ALP > 3 × ULN and abnormalities of the biliary tract on magnetic resonance cholangiopancreatography (MRCP). In this period, severe COVID-19 was defined as requiring intensive care unit (ICU) admission, respiratory failure requiring mechanical ventilation or extracorporeal membrane oxygenation (ECMO), and use of vasopressors. The diagnosis of COVID-19 was confirmed with a positive result on nasopharyngeal swab polymerase-chain-reaction (PCR) assay. Bile duct injury was identified by abnormal liver tests with serum ALP > 3 × ULN, combined with abnormalities of the biliary tract on MRCP findings. This retrospective study was approved by the New York University Grossman School of Medicine Institutional Review Board.

We analyzed the demographic and clinical data on this group of patients, including medical course, laboratory data, and radiographic and histologic findings where available. A Research Electronic Data Capture database captured the data elements of interest. Demographic information included age at admission, sex of patient, race of patient, date of positive COVID-19 PCR test, duration of hospitalization, time from admission to cholangiopathy diagnosis, comorbidities of the patient, and medications before admission. We defined time of COVID cholangiopathy diagnosis as time when the hepatology service was consulted.

Clinical features of each patient's admission included medications given for treatment of COVID (including antivirals, antibiotics, anti-inflammatory medications, and monoclonal antibodies), anticoagulation (both therapeutic and prophylactic), and antiplatelet therapy. Other features recorded included respiratory and circulatory support including supplemental oxygen, mechanical ventilation, prone positioning, and ECMO. Additional details of hospital course included development of sepsis, pneumonia, thrombotic events, strokes, or cardiac events. Patients' dates of discharge or expiration were also recorded.

Four values for laboratory tests were obtained at admission; peak value, value at time of cholangiopathy diagnosis, and value at most recent follow-up. Tests included total bilirubin, AST, ALT, ALP, gamma-glutamyl transpeptidase (GGTP), white blood cell count (WBC), hemoglobin (Hb), platelet count (plt), prothrombin time (PT), international normalized ratio (INR), partial thromboplastin time (PTT), D-dimer, fibrinogen level, erythrocyte sedimentation rate, C-reactive protein, blood urea nitrogen (BUN), and creatinine level. The data were obtained by review of Epic Systems electronic health record and deidentified. Continuous variables were reported with mean (SD) or median (IQR), as appropriate. Categorical variables were reported as counts and frequencies (%). MRCP images were reported by 1 or both of 2 radiologists, and liver biopsy findings were reported by 2 pathologists.


During the time span covered by this study, 2,047 patients were admitted to Tisch Hospital with COVID-19 including 1,178 men (57.5%) and 869 women (42.5%). We identified 12 patients, representing 0.59% of those admitted, who were otherwise recovering from severe COVID-19 and exhibited abnormal biochemical findings indicative of cholestatic liver injury. Table 1 provides comprehensive data on each of the patients. Eleven patients were men, and 1 woman, with a mean age of 58 years. Nine of the 12 patients had a history of hypertension before admission, 5 had obesity, and 5 had history of diabetes. Only 1 patient had a diagnosis of chronic liver disease (hepatic steatosis without evidence of cirrhosis) on previous imaging. Table 2 summarizes the pooled baseline demographic features of the patients.

Table 1.
Table 1.:
Demographics and clinical characteristics of all patients
Table 2.
Table 2.:
Demographics and baseline characteristics of patients

All patients had pneumonia and sepsis during hospitalization and required mechanical ventilation. Three of the patients (25%) received ECMO, and 8 (67%), required prone positioning in addition to mechanical ventilation to optimize oxygen exchange. Eight of 12 (67%) patients experienced a thromboembolic event and required therapeutic anticoagulation treatment. The remaining 4 patients received prophylactic anticoagulation during their hospitalization. Table 3 indicates pooled COVID-19–related features and treatments during hospitalization.

Table 3.
Table 3.:
Clinical characteristics of patients

The mean time from COVID-19 diagnosis to diagnosis of cholangiopathy was 118 days. Peak median laboratory values of the patients included ALT 661 U/L, AST 498 U/L, ALP 1,945 U/L, and total bilirubin 13 mg/dL. Inflammatory markers were markedly elevated, with peak median C-reactive protein being 360 mg/L and erythrocyte sedimentation rate being 120 mm/hr. Median peak creatinine was 6.5 mg/dL, and 6 patients (50%) had peak levels of D-Dimers >10,000 ng/mL. Table 4 summarizes pooled median laboratory values at presentation, peak levels, and last follow-up.

Table 4.
Table 4.:
Median laboratory values at presentation, peak, and most recent time points

In 4 patients, MRCP was ordered before hepatology consultation was called, whereas in 8, the consultant requested it. All 12 (100%) patients had abnormal MRCP findings: 11 patients had “beaded” appearance of intrahepatic ducts, 10 patients had peribiliary diffusion high signal, and 7 patients demonstrated thickening and hyperenhancement of the bile duct wall, which included the common bile duct in 4 patients (Figure 1). Two patients also had mild dilation of the common bile duct to the level of the ampulla, without a definable common bile duct stricture. Gallbladder wall thickening and enhancement was seen in 7 patients. Portal or hepatic vein thrombosis was not seen on any of the MRI studies. Of 8 patients who underwent ultrasound, Doppler studies showed normal hepatic artery flow in all.

Figure 1.
Figure 1.:
Spectrum of imaging findings in coronavirus disease 2019 cholangiopathy. (a) Coronal magnetic resonance cholangiopacreatography image demonstrates “beaded” appearance of the intrahepatic bile ducts. Axial (b) and coronal (c) gadolinium contrast-enhanced T1-weighted images demonstrate diffusely thickened wall of the common hepatic duct and common bile duct (arrows). Diffusion-weighted image (d, e) demonstrates periportal (white arrows) and parenchymal (black open arrows) high signal intensity.

Liver biopsies were performed in 4 patients at the discretion of the individual consultants. There were no significant differences in the presentations of cholangiopathy compared with the other 8 who did not undergo biopsy. All these specimens showed similar features of acute and/or chronic large duct obstruction (Figure 2a,b), but without definitive bile duct loss, confirmed by immunostains for keratins 7 and 19 stain. There was mild fibrosis of some portal tracts (Figure 2b). Immunostain for keratin 7 also showed prominent staining of hepatocytes in all specimens as well, typical of chronic cholestatic liver disease (Figure 2c). All these histologic findings may be seen in both primary sclerosing cholangitis (PSC) and SSC. CD61 immunostain, intended to highlight the presence of platelet fibrin thrombi, demonstrated widespread platelets/exosomes in small sinusoidal aggregates, but no intravascular thrombi were seen in any case (Figure 2d).

Figure 2.
Figure 2.:
Histopathology of coronavirus disease 2019 cholangiopathy. (a) Features of acute large duct obstruction with portal expansion by edema (white spaces) and ductular reaction (dotted line) admixed with neutrophils. Bile ducts (black arrows) are present, but show mild reactive changes. White arrows: hepatic arteries, PV: portal vein. H&E ×20. (b) Features of chronic large duct obstruction in a patient who also shows acute duct obstructive features in other portal tracts in the same biopsy specimen. This chronic injury shows portal expansion less by edema than by fibrosis (blue collagen), chronic inflammation (black arrow), and ductular reaction with associated blue scar (dotted line). Although the bile duct is absent in this portal tract, this may be due to partial sampling. White arrows: hepatic arteries, PV: portal vein. Masson trichrome, ×40. (c) Immunostain (brown) for keratin 7 highlights bile ducts (arrows) and prominent hepatocellular staining indicative of ongoing cholestatic liver disease. Hematoxylin counterstain, ×20. (d) Immunostain (brown) for CD61 highlights finely granular sinusoidal staining of platelets or their exosomes. Larger sinusoidal aggregates may be intrasinusoidal microthrombi. Intravenous or intra-arterial thrombi were not seen in any samples. Hematoxylin counterstain, ×20.

At the time of last follow-up, 4 of the patients in the study had died. One 57-year-old man (patient 10) died after a lengthy hospital course, ultimately having a perforated duodenal ulcer. A 42-year-old man (patient 9) died after having a massive gastrointestinal bleed, and a 72-year-old man (patient 6) presented with new-onset ascites and ultimately died in the setting of hemoperitoneum from large volume paracentesis. A 39-year-old man (patient 7), who had recurrent cholangitis at our institution and was subsequently listed for liver transplant at another institution, died after a lengthy hospital course.

Among other severely ill patients, a 73-year old man (patient 1) was referred to hospice after being deemed not a transplant candidate due to multiple comorbidities and multiorgan failure. At last follow-up, the patient had a total bilirubin of 35 mg/dL 8 months after initial admission with COVID-19. This patient's follow-up MRCP, 7 months after initial diagnosis of COVID-19, demonstrated worsening of severe biliary tract disease (Figure 3). Another 65-year-old man with a history of diabetes mellitus and coronary artery disease has had 1 admission for cholangitis, treated medically, with a total bilirubin of 27 mg/dL and new abdominal ascites at last follow-up 10 months after admission with COVID-19. This patient's follow-up, 9 months after initial diagnosis of COVID-19, also showed worsening biliary tract disease (Figure 4). In all, 6 patients underwent repeat MRCP, 6–12 months after their initial diagnosis of COVID-19. Four of the 6 patients exhibited worsening intrahepatic dilation on follow-up, while the 2 other patients had stable findings.

Figure 3.
Figure 3.:
A 73-year-old man with progressive coronavirus disease 2019 cholangiopathy. Serial magnetic resonance cholangiopacreatography images 3 months (a), 4 months (b), and 7 months (c) after the initial diagnosis of coronavirus disease 2019 demonstrate worsening intrahepatic biliary dilatation with multifocal strictures.
Figure 4.
Figure 4.:
A 65-year-old man with progressive coronavirus disease 2019 cholangiopathy. Serial magnetic resonance cholangiopacreatography images 5 months (a) and 9 months (b) after the initial diagnosis of coronavirus disease 2019 demonstrate worsening intrahepatic biliary dilatation in the left lobe with multifocal strictures.

Five patients were sufficiently ill to warrant referral for consideration of liver transplant. Patient 1, as described above, was deemed not a transplant candidate because of multiple comorbidities and advanced age, and was discharged to home hospice. Patient 11 had recurrent cholangitis and persistent hyperbilirubinemia, but ultimately declined formal transplant evaluation. Patient 7, who had recurrent cholangitis and persistent hyperbilirubinemia, was evaluated for transplant at our institution before ultimately being listed at an outside hospital. However, he died without receiving a transplant. Patient 8 is currently being evaluated for transplant and receiving appropriate work-up. Patient 3 underwent living donor liver transplantation in December of 2020. The patient was recovering well, with normal liver function tests, 4 weeks postoperatively.

Four patients in the cohort underwent endoscopic retrograde cholangiopancreatography (ERCP), 3 of whom were in the group considered for transplant. Patient 1 underwent ERCP with plastic CBD stent placed, sphincterotomy, with a repeat ERCP 1 month later with removal of the stent. Multiple biliary strictures were noted in the intrahepatic ducts. Patient 7 underwent 2 ERCPs at our institution, with stone removal, CBD stent placement and removal, and balloon dilation of strictures in the right and left hepatic ducts without improvement. Patient 8 underwent ERCP with dilation of the left main hepatic duct and placement of a plastic stent. Patient 5 underwent ERCP for a bile leak after a laparoscopic cholecystectomy for acalculous cholecystitis. No other patients underwent ERCP in large part because the predominance of diffuse intrahepatic biliary tract abnormalities did not seem likely to be conducive to endoscopic intervention.

Eleven patients have been started on ursodiol, without convincing evidence of therapeutic benefit. In general, the patients had some improvement in laboratory tests, particularly AST and ALT. However, total bilirubin and ALP have remained markedly elevated with median values on most recent follow-up of total bilirubin of 8.8 mg/dL, ALT of 117 U/L, AST of 128 U/L, and ALP of 799 U/L (Tables 1 and 4).


In this series, we have described a syndrome of severe biliary tract injury developing in patients who have had COVID-19. We have previously proposed (13) that this syndrome be designated as “COVID-associated cholangiopathy” to differentiate it from the more prevalent biochemical pattern of hepatocellular injury reported extensively in patients with COVID-19 (5–8). Our 12 patients, 11 men and 1 woman, had cholestatic or mixed cholestatic/hepatocellular liver enzyme patterns, hyperbilirubinemia, bile duct inflammation and/or stricturing on MRI/MRCP. Our patients' peak ALT and AST levels were elevated in some to above 10 times ULN, but the elevations in ALP still were the most striking feature of the liver enzyme profiles, as were the features of bile duct obstruction versus hepatocellular injury in those patients in whom liver histology was available. This syndrome was identified late in the patients' courses after critical illness, with a mean time from COVID-19 diagnosis through PCR to time of cholangiopathy diagnosis of 118 days. All patients had required ICU courses, mechanical ventilation, and 3 required ECMO. Eight of our patients had known thromboembolic events despite being on deep vein thrombosis prophylaxis.

There was a preponderance of male patients in this cohort to a degree disproportionate to the male:female ratio (92% male) of patients admitted for COVID-19 during the period of the study (57.5% male). Our sample size makes it difficult to draw definitive conclusions about the possibility of greater male susceptibility of men to cholangiopathy after severe COVID-19 as a result of specific pathogenetic factors over and beyond the greater general susceptibility of men to severe COVID-19. Further studies should help elucidate this question. Similarly, although this is the largest series of patients with COVID-associated cholangiopathy reported to date, the sample size is insufficient to draw conclusions about the relationships between clinical features such as thrombotic complications or therapeutic interventions and either the occurrence or course of cholangiopathy, for which larger prospective or case-control studies would be useful. Given our inclusion criteria for this analysis, we cannot preclude the possibility that some patients with levels of ALP < 3 times ULN may have COVID-associated cholangiopathy, or that some patients with ALP elevations > 3 times ULN may have cholangiopathy not apparent on imaging or other causes of such elevations.

Thus far, we have not seen complete resolution of signs of biliary injury. Eleven patients have been treated with ursodiol, with little or no improvement in their liver function tests or clinical status. Five patients have been considered for liver transplant evaluation as a result of various combinations of progressive jaundice, hepatic insufficiency, renal insufficiency, and/or episodes of bacterial cholangitis, with 1 patient having received a living donor liver transplant. As exemplified in Figures 3 and 4, several patients in this series have had documented worsening on MRCP of severe biliary stricturing disease. During preparation of this article, we became aware of a recent case report of a patient with similar findings in which cholestasis was said to be improving slowly after discharge, but no follow-up clinical data or radiographic studies were available (14). A 3 patient series was also recently reported by Roth et al. (15) highlighting similar clinical, laboratory, and radiographic features to those described here. Liver biopsies showed hepatic fibrosis, leading the authors to speculate on the potentially severe prognostic implications of this entity. The longitudinal observations described in several patients in our series vindicate this concern in the form of progressive, severe biliary tract injury on serial MRCPs, persistent jaundice, cholestatic liver enzyme abnormalities, recurrent infection, and liver failure, with indications for liver transplantation in several patients and actual performance of a living donor transplant in 1 patient.

The hepatobiliary injury we describe may be a result of ischemic injury related to microvascular coagulopathy and/or hypotension during severe illness or sepsis. SARS-CoV-2 enters the host through the angiotensin-converting enzyme 2 (ACE2) receptor in respiratory epithelium. However, ACE2 is expressed diffusely in endothelial cells of small and large arteries and veins throughout the body (16). The ubiquitous expression of ACE2 in vascular endothelium has been proposed as the key pathogenetic factor in the widespread coagulation that contributes substantially to the morbidity and mortality of COVID-19 (3,8). A recent autopsy series showed mild hepatic steatosis with little inflammation, also described by others, but numerous platelet-fibrin microthrombi in the hepatic sinusoids (17). However, findings in livers in COVID-19 are quite variable. In a study of hepatic pathology in 40 fatal cases of COVID-19, Lagana et al. (18) reported macrovesicular steatosis in 75%, mild lobular necroinflammation and portal inflammation in 50%, and vascular pathology, including sinusoidal microthrombi, in 15%. The absence of overt vascular pathology or intravascular thrombi, other than the small sinusoidal aggregates, seen in these biopsied tissues does not preclude significant vascular injury and thrombosis elsewhere in the liver. The biliary radiographic findings are inhomogeneous in these cases, possible pathogenetic vascular lesions would likewise be so. Regarding these sinusoidal platelet/exosome aggregates, it is as yet unclear whether CD61 staining such as this is also present in PSC or SSC of other causes.

Direct virus-mediated damage to the biliary epithelium may be involved in the pathogenesis of the cholangiopathy described here. Chai et al. (17) studied specific expression of ACE2 in cholangiocytes and found ACE2 expression in 59.7% of cholangiocyte clusters and low expression in hepatocytes (2.6%). They found the expression of ACE2 in cholangiocytes to be comparable with ACE2 expression in lung alveolar type II cells. Other investigators have similarly demonstrated that biliary epithelial cells richly express ACE2 (16,19). An in vitro study of human liver organoids suggested that cholangiocytes may be susceptible to infection with SARS-CoV-2 (19). Ultrastructural studies have demonstrated viral particles in hepatocytes (20). These findings warrant further consideration of the possibility that severe cholestatic injury may be related to direct infection of biliary epithelial cells by SARS-CoV-2.

Drug-induced liver injury is another potential hypothesis for the cholestatic liver injury seen in the patients. During the pandemic, a large assortment of medications has been subjected to trials. Among the medications that have been used in the treatment of COVID-19, remdesivir and IL-6 receptor agonists have been implicated as a cause of ALT elevations, although not with the pattern of biliary injury demonstrated in this study, nor was there any 1 medication consistently administered to all patients in this study (20–23).

The cholangiopathy described here in patients with COVID-19 bears similar features to SSC, described in patients after lengthy ICU stays (12). This entity, primarily discussed in case reports or small case series, has been seen in critically ill patients with polytrauma, infection, burn, major surgery, or respiratory failure (24–26). It has been described as a cholangiopathy similar to cases of ischemic cholangiopathy seen after liver transplantation and with radiographic features similar to those seen in PSC (24).

Many of the patients found to have SSC after critical illness have been diagnosed by ERCP and/or liver histology. Gelbmann et al. (24) described endoscopic findings of biliary casts with impairment of biliary flow and subsequent cholangitis and liver biopsy with confirmed cholangitis and hemorrhagic exudates in bile ducts. All 26 patients described in that study suffered from respiratory failure and also required mechanical ventilation, similar to our patient population. However, the findings in the studies of SSC after critical illness differed in some respects from our study. Laurent et al. (12) found increases in the ALP after a median time of only 11 days with peaking on day 15. Findings on MRCP included endoluminal defects of bile ducts corresponding to biliary casts, multiple strictures of intrahepatic bile ducts, thickening and enhancing of intrahepatic bile ducts, and biliary leakage with hyperintense collections suggestive of bilomas. On repeat MRCP, 2 patients had portal venous abnormalities, including thrombosis of branches of the portal vein. All 13 patients who continued to be followed after these findings received ursodeoxycholic acid at a dose of 10–15 mg/kg. Four patients underwent ERCP with endoscopic sphincterotomy of papilla for persistent jaundice, and 2 patients considered too ill for liver transplantation died from hepatic failure. No patient in this study received liver transplant. Nine remaining patients had persistent minor stricturing but with no significant complications, while 1 had worsening stricturing of intrahepatic ducts with no complication, and 1 had normal liver tests.

The similarities between SSC in critically ill patients and COVID cholangiopathy suggest a possible link between hypoxic liver injury or ischemic hepatopathy and cholestatic liver injury. The hepatic parenchyma, or hepatocytes, receives dual supply from the portal vein and from hepatic arteries. By contrast, the intrahepatic biliary tree is supplied exclusively by hepatic arterial branches through the peribiliary vascular plexus. This suggests that the biliary epithelium is more vulnerable to ischemic injury, given its dependence on arterial supply alone versus the hepatocytes which receive dual supply (25,27,28). This is made evident by cases of hepatic artery thrombosis, which occurs in 9% of adult recipients of liver transplant after interruption of the arterial blood supply, often resulting in biliary ischemic lesions including necrosis with biliary leakage and ischemic strictures (29,30).

An additional feature that may be pathogenetically shared by the pathogenesis of SSC related to critical illness and COVID cholangiopathy is the cytokine release syndrome (CRS) that occurs in both populations (28,31). CRS may cause immune-mediated injury to lung and liver due to excessive release of proinflammatory cytokines (27). It is possible that the biliary epithelium is particularly susceptible to the CRS-immune mediated injury, as suggested in reports that CRS can lead to severe cholestatic liver injury (31). In the recent report from the RECOVERY trial, the use of dexamethasone resulted in lower 28-day mortality among those with moderate to severe COVID-19 infection (32). Similarly, anticoagulant therapy seems to be associated with better prognosis in severe COVID patients meeting sepsis-induced coagulopathy criteria or with markedly elevated D-dimers (33,34). Studies on the impact of dexamethasone and anticoagulants in patients with severe COVID-19 on the incidence of emergent cholangiopathy in patients who have had severe COVID-19 would be of interest.

Should the pathogenesis of COVID cholangiopathy prove to be similar to that for SSC related to critical illness, we would speculate that the syndrome is potentiated in frequency and/or intensity by factors such as epithelial infection with SARS-CoV-2, microthrombosis. or the magnitude of the CRS peculiar to COVID-19. This could account for the frequency with which we have observed these findings in our population when SSC after critical illness is generally considered rare.

In conclusion, patients with severe COVID-19 may develop cholestatic injury associated with biliary tract inflammation and/or strictures as a late complication. This may reflect SSC after critical illness (12), but other pathogenetic mechanisms require study (e.g., ischemia related to COVID-19–associated thrombosis or direct biliary epithelial viral infection). Our observations raise important concerns about long-term morbidity and late complications, including the potential need for liver transplantation or mortality engendered by this syndrome. COVID cholangiopathy is an important complication of SARS-CoV-2 infection that requires further study on its natural history and potential preventive or therapeutic interventions.


Guarantor of the article: Ira Jacobson, MD.

Specific author contributions: I.J.: conception of study, planning and conduct of study, collection and interpretation of data, drafting of manuscript, and critical revision. S.F.: collection and interpretation of data, conduct of study, drafting of manuscript, and critical revision. F.O.: collection and interpretation of data, conduct of study, drafting of manuscript, and critical revision. S.O.: collection and interpretation of data and critical revision of manuscript. D.F.: collection and interpretation of data, drafting of manuscript, and critical revision of manuscript. H.K.: collection and interpretation of data, critical revision of manuscript, and final approval. J.P.: collection and interpretation of data, drafting of manuscript, and critical revision of manuscript. C.S.: collection and interpretation of data and critical revision of manuscript. V.F.-D.: collection and interpretation of data and critical revision of manuscript. S.Y.: design of database, collection and interpretation of data, statistical support, critical review of manuscript, and final approval. N.D.: collection and interpretation of data and critical revision of manuscript. S.S.: collection and interpretation of data, drafting of manuscript, and critical revision of manuscript. N.T.: collection and interpretation of data, drafting of manuscript, and critical revision of manuscript. S.K.: collection and interpretation of data, drafting of manuscript, and critical revision of manuscript. K.S.: collection and interpretation of data, drafting of manuscript, and critical revision of manuscript.

Financial support: None to report.

Potential competing interests: None to report.

Previous presentation: This study was presented at the 2020 Annual Meeting of the American Association for the Study of Liver Diseases, November 13-16, LP28.

Study Highlights


  • ✓ Patients hospitalized with coronavirus disease 2019 (COVID-19) frequently have elevations in liver enzymes.
  • ✓ Most reports of hepatic involvement in COVID-19 have focused on aminotransferases.
  • ✓ Biliary tract injury in severe COVID-19, similar to that seen in secondary sclerosing cholangitis after critical illness, has been reported.


  • ✓ Severe biliary tract injury resembling sclerosing cholangitis may occur during recovery after severe COVID-19.
  • ✓ Patients with this syndrome have marked elevations in alkaline phosphatase and abnormal bile ducts with evidence of biliary inflammation, beading, stricturing, and dilatation.
  • ✓ The mean time to recognition of this syndrome was over 3 months after admission for COVID-19.
  • ✓ All patients had been critically ill and required intensive care.
  • ✓ Progressive biliary tract injury with jaundice, hepatic insufficiency, and/or recurrent bacterial cholangitis has been observed.
  • ✓ One patient has undergone liver transplantation, and others have been referred for transplant evaluation.


1. Engineering JHUCfSSa. COVID-19 Dashboard. Johns Hopkins University, 2021. ( Accessed February 17, 2021.
2. Sonzogni A, Previtali G, Seghezzi M, et al. Liver histopathology in severe COVID 19 respiratory failure is suggestive of vascular alterations. Liver Int 2020;40(9):2110–6.
3. Ferm S, Fisher C, Pakala T, et al. Analysis of gastrointestinal and hepatic manifestations of SARS-CoV-2 infection in 892 patients in Queens, NY. Clin Gastroenterol Hepatol 2020;18(10):2378–e1.
4. Sultan S, Altayar O, Siddique SM, et al. AGA Institute rapid review of the gastrointestinal and liver manifestations of COVID-19, meta-analysis of international data, and recommendations for the consultative management of patients with COVID-19. Gastroenterology 2020;159(1):320–e27.
5. Phipps MM, Barraza LH, LaSota ED, et al. Acute liver injury in COVID-19: Prevalence and association with clinical outcomes in a large US cohort. Hepatology 2020;72(3):807–17.
6. Bertolini A, van de Peppel IP, Bodewes FAJA, et al. Abnormal liver function tests in patients with COVID-19: Relevance and potential pathogenesis. Hepatology 2020;72(5):1864–72.
7. Hundt MA, Deng Y, Ciarleglio MM, et al. Abnormal liver tests in COVID-19: A retrospective observational cohort study of 1827 patients in a major U.S. Hospital network. Hepatology 2020;72(4):1169–76.
8. Fan Z, Chen L, Li J, et al. Clinical features of COVID-19-related liver functional abnormality. Clin Gastroenterol Hepatol 2020;18(7):1561–6.
9. Becker RC. Anticipating the long-term cardiovascular effects of COVID-19. J Thromb Thrombolysis 2020;50(3):512–24.
10. Fan BE, Umapathi T, Chua K, et al. Delayed catastrophic thrombotic events in young and asymptomatic post COVID-19 patients. J Thromb Thrombolysis 2020:1–7.
11. Morley JE. Editorial: COVID-19 - the long road to recovery. J Nutr Health Aging 2020;24(9):917–9.
12. Laurent L, Lemaitre C, Minello A, et al. Cholangiopathy in critically ill patients surviving beyond the intensive care period: A multicentre survey in liver units. Aliment Pharmacol Ther 2017;46(11-12):1070–6.
13. Faruqui S, Okoli F, Olsen S, et al. Bile duct injury and severe Cholestatis in patients recovering from severe COVID-19; a novel entity of COVID-associated cholangiopathy. AASLD Digital Experience 2020; November 13-16, LP28.
14. Edwards K, Allison M, Ghuman S. Secondary sclerosing cholangitis in critically ill patients: A rare disease precipitated by severe SARS-CoV-2 infection. BMJ Case Rep 2020;13(11):e237984.
15. Roth NC, Kim A, Vitkovski T, et al. Post-COVID-19 cholangiopathy: A novel entity. Am J Gastroenterol 2021;116(5):1077–82.
16. Hamming I, Timens W, Bulthuis MLC, et al. Tissue distribution of ACE2 protein, the functional receptor for SARS coronavirus. A first step in understanding SARS pathogenesis. J Pathol 2004;203(2):631–7.
17. Chai X, Hu L, Zhang Y, et al. Specific ACE2 expression in cholangiocytes may cause liver damage after 2019-nCoV infection. bioRxiv 2020:2020 (
18. Lagana SM, Kudose S, Iuga AC, et al. Hepatic pathology in patients dying of COVID-19: A series of 40 cases including clinical, histologic, and virologic data. Mod Pathol 2020;33(11):2147–55.
19. Zhao B, Ni C, Gao R, et al. Recapitulation of SARS-CoV-2 infection and cholangiocyte damage with human liver ductal organoids. Protein Cell 2020;11(10):771–5.
20. Wang Y, Liu S, Liu H, et al. SARS-CoV-2 infection of the liver directly contributes to hepatic impairment in patients with COVID-19. J Hepatol 2020;73(4):807–16.
21. Beigel JH, Tomashek KM, Dodd LE, et al. Remdesivir for the treatment of covid-19 — final report. N Engl J Med 2020;383(19):1813–26.
22. Wang Y, Zhang D, Du G, et al. Remdesivir in adults with severe COVID-19: A randomised, double-blind, placebo-controlled, multicentre trial. Lancet 2020;395(10236):1569–78.
23. Guaraldi G, Meschiari M, Cozzi-Lepri A, et al. Tocilizumab in patients with severe COVID-19: A retrospective cohort study. Lancet Rheumatol 2020;2(8):e474–e84.
24. Lin T, Qu K, Xu X, et al. Sclerosing cholangitis in critically ill patients: An important and easily ignored problem based on a German experience. Front Med 2014;8(1):118–26.
25. Gelbmann CM, Rümmele P, Wimmer M, et al. Ischemic-like cholangiopathy with secondary sclerosing cholangitis in critically ill patients. Am J Gastroenterol 2007;102(6):1221–9.
26. Scheppach W, Druge G, Wittenberg G, et al. Sclerosing cholangitis and liver cirrhosis after extrabiliary infections: Report on three cases. Crit Care Med 2001;29(2):438–41.
27. Gudnason HO, Björnsson ES. Secondary sclerosing cholangitis in critically ill patients: Current perspectives. Clin Exp Gastroenterol 2017;10:105–11.
28. Leonhardt S, Veltzke-Schlieker W, Adler A, et al. Trigger mechanisms of secondary sclerosing cholangitis in critically ill patients. Crit Care 2015;19(1):131.
29. Mourad MM, Liossis C, Gunson BK, et al. Etiology and management of hepatic artery thrombosis after adult liver transplantation. Liver Transpl 2014;20(6):713–23.
30. Bekker J, Ploem S, de Jong KP. Early hepatic artery thrombosis after liver transplantation: A systematic review of the incidence, outcome and risk factors. Am J Transpl 2009;9(4):746–57.
31. Abdalian R, Heathcote EJ. Sclerosing cholangitis: A focus on secondary causes. Hepatology 2006;44(5):1063–74.
32. Oda H, Ishihara M, Miyahara Y, et al. First case of cytokine release syndrome after nivolumab for gastric cancer. Case Rep Oncol 2019;12(1):147–56.
33. Group TRC. Dexamethasone in hospitalized patients with covid-19—preliminary report. N Engl J Med 2020;384(8):693–704.
34. Tang N, Bai H, Chen X, et al. Anticoagulant treatment is associated with decreased mortality in severe coronavirus disease 2019 patients with coagulopathy. J Thromb Haemost 2020;18(5):1094–9.
© 2021 by The American College of Gastroenterology