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microRNAs in asthma: potential therapeutic targets

Greene, Catherine M.; Gaughan, Kevin P.

Current Opinion in Pulmonary Medicine: January 2013 - Volume 19 - Issue 1 - p 66–72
doi: 10.1097/MCP.0b013e32835a5bc8
ASTHMA: Edited by Nicola A. Hanania

Purpose of review: Asthma is a global disease affecting millions of people. Current treatments are largely symptomatic and, although often effective, can be associated with various side effects. microRNAs (miRNAs/miRs) are regulatory RNAs that affect protein synthesis. They represent new therapeutic targets, and medicines that target specific miRNAs may have potential in the treatment of asthma.

Recent findings: There have been a number of studies in the field of miRNA that implicate specific miRNAs in the pathophysiology of asthma. For example, studies using mouse models have identified miRNAs that are altered in response to allergen challenge. Certain miRNAs that are involved in the regulation of interleukin-13 and the TH2 response, key components of the asthmatic response, have been shown to be amenable to modulation by premiRs and antimiRs. Other studies have identified miRNAs that are implicated in bronchial smooth muscle hyperresponsiveness and proliferation. Single-nucleotide polymorphisms in miRNA responsive elements within asthma susceptibility genes, and also in miRNAs themselves, can also contribute to the asthma phenotype.

Summary: Developing miRNA-based medicines to treat the pulmonary manifestations of asthma could yield therapeutics with new properties that have the potential to treat both the inflammation and hyperresponsivesness associated with this disease.

Respiratory Research Division, Department of Medicine, Royal College of Surgeons in Ireland, Education and Research Centre, Beaumont Hospital, Dublin, Ireland

Correspondence to Catherine M. Greene, Respiratory Research Division, Department of Medicine, Royal College of Surgeons in Ireland, Education and Research Centre, Beaumont Hospital, Dublin 9, Ireland. Tel: +353 1 8093800; e-mail: cmgreene@rcsi.ie

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INTRODUCTION

Asthma is the reaction to inhaled antigens such as respiratory viruses, allergens, or air pollutants that results in airway inflammation, exaggerated airway hyperresponsiveness (AHR), and reversible airflow obstruction. Asthma afflicts both developed and developing nations, and as of 2004, over 300 million people were affected worldwide [1]. In the United States, 8.4% of the population have asthma, and it is responsible for approximately 500 000 hospitalizations and 1.9 million emergency room visits, totaling $56 billion annually [2].

Current treatments are primarily glucocorticoids (e.g., dexamethasone) and inhaled short-acting β-2 agonists, such as salbutamol. Although these have yielded major improvements to patient well-being via their ability to inhibit multiple inflammatory processes and prevent contraction of the bronchial smooth muscles (BSMs), respectively, they are associated with side effects ranging from dysphonia and thrush to effects on the hypothalamic–pituitary–adrenal system and cardiac arrhythmia [3]. Some individuals are ‘glucocorticoid resistant’. Thus, there is a clear need for new therapeutics that can effectively treat asthma and have fewer side effects.

microRNAs (miRNAs/miRs) are small noncoding RNAs that regulate protein synthesis by way of RNA silencing. miRNAs have been shown to have a key role in cancer [4,5], viral infections [6], and in pulmonary inflammatory diseases [7], such as cystic fibrosis [8]. Herein, we outline the current knowledge of miRNA function in asthma and how miRs could be targets for future therapeutics.

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ASTHMA

Individuals with asthma experience respiratory stress that results from bronchial inflammation and smooth muscle contraction. Symptoms include reversible airflow obstruction, AHR/bronchospasms, mucus hypersecretion, and a poor forced expiratory volume in 1 s percentage predicted. Multiple cellular changes occur – the most significant being airway remodeling, characterized by smooth muscle hyperplasia, subepithelial cell fibrosis, goblet cell hyperplasia, and neovascularization. Pulmonary inflammation is also a major component of asthma involving influx of mast cells, neutrophils, TH2 cells, and most notably eosinophils. There is also a change in the smooth muscle response wherein BSM cells become hyperresponsive to acetylcholine stimulation.

The physiological changes that occur are due to TH2-driven inflammation in response to allergen exposure, resulting in increased TH2 cytokine levels [interleukin (IL)-4, IL-5, IL-9, and IL-13] and decreased anti-inflammatory cytokines (e.g., IL-10). Together, these further promote the TH2 response but also cause activation of natural killer cells, dendritic cells and eosinophils, promote eosinophila, increase matrix metalloproteinase activity, increase serum immunoglobulin E concentrations, and promote smooth muscle hypercontractiveness.

Both environmental exposure to air pollutants and genetic predisposition can cause the heightened TH2 response. Genes involved in inflammation [e.g., IL-10, STAT6, IL-4, IL-13, tumor necrosis factor (TNF), IL-4R] or with a role in building immune tolerance during fetal development (HLA-DRB1, HLA-DQB1) have been implicated as genetic factors. Given the importance of miRNAs in the regulation of expression of up to 60% of the transcriptome, it is worth considering their potential as new therapeutic targets for asthma.

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microRNAs

miRNAs are small noncoding RNAs that regulate protein synthesis by blocking translation or by targeting mRNA transcripts for degradation. miRNA regulation is complicated because a single mRNA can be regulated by many miRNAs, and a single miRNA can potentially regulate many mRNA transcripts. miRs were first identified in Caenorhabitis elegans, with the discovery of lin-4 [9].

Mature miRNAs are bound by the RNA-induced silencing complex (RISC) in the cytosol to form miRISC. This is guided to the appropriate mRNA via the complementary binding between the 6–8 nucleotide seed region, unique to each miRNA and miRNA recognition elements (MRE) within the 3’ untranslated region of the target mRNA. mRNA translation is then prevented by blocking the ribosome reading the mRNA or by directing the mRNA to p-bodies wherein the mRNA is degraded.

miRs represent a new class of drug target and their therapeutic modulation is possible by the use of over-expression or antisense inhibition approaches [10]. AntimiRNA oligonucleotides (antimiRs) anneal to miRNAs and inhibit their function. Other antimiR methods include locked nucleic acids [11] and cholesterol-conjugated so-called ‘antagomiRs’. miRNAs that are downregulated in disease can be transiently replaced using double-stranded miRNA mimetics called premiRs, or stably using plasmids encoding primary, premiR or mature miRNA. Plasmid or viral vectors expressing short-hairpin RNAs can also be used to overexpress miRs and have the potential for more persistent expression as this approach can facilitate the expression of multiple miRs from one transcript [12]. Blocking miRNA function in asthma via these approaches may provide a new nonsteroidal anti-inflammatory approach to treatment.

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microRNA AND ASTHMA STUDIES

Although relatively few studies have been carried out to date, there is evidence that miRs are implicated in the asthmatic disease process (summarized in Fig. 1). For example, profiling studies of lung tissue from murine models of acute, intermediate, and chronic asthma identified eight candidate miRs likely to be implicated in asthma [13]. Data from human miRNA profiling studies by Tsitsiou et al.[14] identified selective downregulation of miR-28–5p and miR-146a/b in CD8+ and CD4+ cells from individuals with severe asthma that was associated with widespread changes in mRNA expression.

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microRNAs that affect cytokines and inflammation

A selection of reports have described the role of certain miRs in regulation of cytokine expression and inflammation in asthma.

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miR-126

Using a mouse house dust mite (HDM) model of asthma, Mattes et al.[15] identified changes in miRNA expression in the airways. Three miRNAs were significantly upregulated in the HDM model: miR-16, miR-21, and miR-126. The increase in miR-126 expression did not occur in Toll-like receptor (TLR) 4−/− and MyD88−/− mice, suggesting that lipopolysaccharide (LPS) activation is required for the amplification of miR-126 levels. Knockout mice experienced less AHR and less migration of immune cells into the lungs in reaction to HDM, whereas treatment of wild-type mice with antimiR-126 before HDM exposure resulted in less AHR and mucus, and fewer eosinophils/neutrophils being recruited. AntimiR-126 also decreased levels of the TH2 cytokines IL-5 and IL-13. Subsequent antimiR-126 studies in an ovalbumin (OVA) model showed a similar effect on the TH2 response [16]. Whether the effects were uniquely due to effects on TH2 cytokines could not be determined, given that eotaxin expression was also decreased in the airways possibly as a consequence of lower TLR4 expression.

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Let-7

The first attempt at identifying the role of the let-7 family in asthma showed that let-7 members, specifically let-7a, had a proinflammatory role [17]. Kumar et al.[18] disputed these findings by reporting that increases in IL-13 in allergen-challenged mice were unrelated to let-7a and later went on to conduct work demonstrating that members of the let-7 family are anti-inflammatory and directly inhibit IL-13 expression [19▪]. Intranasal delivery of a let-7 mimic to lungs of mice with allergic inflammation resulted in a decrease in IL-13 levels, resolution of airway inflammation, reduction in AHR, and attenuation of mucus metaplasia and subepithelial fibrosis. Thus, let-7 miRs inhibit IL-13 expression and represent a major regulatory mechanism for modulating IL-13 secretion in IL-13-producing cell types, and thereby TH2 inflammation. Therefore, let-7 would, thus, appear to be anti-inflammatory, although an independent repeat of these results would be needed to confirm this conclusion.

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miR-21

Lu et al.[20] provided the first significant insight into the role of miR-21 in asthma by showing that miR-21 expression could be stimulated by IL-13 and that miR-21 targets IL-12p35 mRNA and lowers IL-12 protein expression. IL-12p35 plays a role in balancing the TH2/TH1 skewing of T-helper cells; less IL-12 expression would partially account for the exaggerated TH2 response seen in asthma. This work was expanded upon by studying the immune response of miR-21−/− mice [21]. Following OVA stimulation, these mice produced greater interferon (IFN)γ and IL-12, whereas there was significantly less IL-4 compared with normal OVA-treated mice. Consequently, these mice had less influx of eosinophils into the lung but experienced greater TH1 hypersensitivity. Thus, Lu et al. have created a valuable narrative of how IL-12 controls the TH1/TH2 balance and how miRNA-21 in turn regulates IL-12 and promotes TH2 skewing.

miR-21's role in IL-12 regulation is not the only proposed activity for this miR. Sheedy et al.[22] have proposed that miR-21 can have an anti-inflammatory/negative feedback regulatory role by targeting PDCD4 [22]. PDCD4 is a proinflammatory protein that downregulates IL-10 production. This dual role for miR-21 demonstrates the complex nature of miRNA regulation, and both studies make the case for miR-21 being an immunomodulating molecule.

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miR-155

Another miRNA that could have a role in asthma but has yet to be studied in an asthma model is miR-155. miR-155 has a significant proinflammatory role in response to LPS [23▪▪]. The anti-inflammatory action of glucocorticoids has been shown to be dependent on the downregulation of miR-155 activity, and miR-155 expression is nuclear factor kappa B (NFκB)-dependent. This would indicate that miR-155 is a proinflammatory effector produced in response to TLR4 signaling. Interestingly, miR-155 promotes TH1 differentiation, as miR-155−/− mutants have enhanced TH2 cytokine production. Although miR-155 has been studied in the context of other disease states such as arthritis [24] and endotoxin shock, its well proven role in inflammation warrants further study in the context of asthma, particularly in how it pertains to TH2 differentiation.

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miR-145

Although there is not extensive work done on a role for miR-145 in asthma, Collison et al.[25] have provided an insight into its proinflammatory role. miR-145 is highly expressed in the airways, and its expression is upregulated upon HDM stimulation in mice [25]. Levels of miR-145 were decreased by antimiR-145 administration in conjunction with the HDM stimulation. Concomitant decreases in goblet cell hyperplasia, peribronchial eosinophils, and production of IL-5 and IL-13 were also evident. The markedly anti-inflammatory effect of antimiR-145 in this model was as striking as dexamethasone treatment. Although no direct target of miR-145 was demonstrated that could explain these effects, miRNA-145 is likely to be a negative regulator of the proinflammatory machinery, much like miR-126 targeting of BOB.1/OBF.1.

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miR-146

Similar to miR-155, miR-146 is an NFκB-dependent miRNA that is transcribed upon LPS stimulation. In contrast, however, miR-146 has been shown to be a negative regulator of the TLR4 pathway, participating as part of a negative feedback loop to prevent an overexuberant response to LPS stimulation. miR-146 is upregulated upon LPS stimulation and based upon luciferase reporter assays it targets TNF receptor-associated factor 6 (TRAF6) and IL-1 receptor-associated kinase 1 (IRAK1), both of which are adaptor proteins involved in TLR signaling [26]. Indeed miR-146 mimics can decrease IL-6 and IL-8 expression by lowering IRAK1 and TRAF6 protein expression [27], with earlier studies showing a similar effect on regulated and normal T cell expressed and secreted (RANTES) and IL-8 via IRAK1 regulation. In the past, miR-146 has also been shown to inhibit cytokine-induced apoptosis in human bronchial epithelial cells, suggesting that it has an important role in asthma in terms of both inflammation and airway remodeling.

Changes in miR-146a and miR-146b have been reported in asthma. Feng et al.[28] observed that miR-146a and miR-146b (and miRNA-181a) are proinflammatory factors in asthma, and that downregulation of miRNA-146a may partially account for the anti-inflammatory effect of dexamethasone. How these findings tally with the observations of Tsitsiou et al. [14] regarding reduced miR-146a in CD4+ and CD8+T cells in vivo in patients with severe asthma remains to be elucidated.

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miR-106a

miR-106a is known to inhibit IL-10 in a posttranscriptional manner. Recently, knockdown of miR-106a in an established murine allergic airway inflammation was shown to significantly alleviate many features of asthma including AHR, airway inflammation, increased Th2 response, goblet cell metaplasia, and subepithelial fibrosis along with increase in IL-10 levels in lung. The authors claim that this work represents the first in-vivo proof of a miRNA-mediated regulation of IL-10, with a potential to reverse an established asthmatic condition [29].

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miR-221

It has been suggested that miR-221 plays a role in the pathogenesis of asthma from studies showing that its expression is increased in asthmatics. Furthermore, antagonism of miR-221 in a mouse OVA model reduces airway inflammation [30]. Mayoral et al.[31], having carried out mouse studies using miR-221 lentiviral overexpression and depletion systems, suggest that it has mast cell-specific effects and contributes to mast cell degranulation and cytokine production.

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microRNAs that impact on bronchial smooth muscle

A characteristic of the asthmatic lung is the altered smooth muscle response, whereby BSM cells become hyperresponsive to acetylcholine stimulation.

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Hyperresponsiveness and miR-133

The first suggestion that miR-133 could impact asthma was from a study showing that miR-133 influenced cardiac muscle contraction and the hypothesis that miR-133 could have a similar effect on BSM [32]. This investigation elegantly demonstrated that miR-133 could directly downregulate expression of RhoA protein, which is known to be a key protein in hypercontractive smooth muscles seen in asthma. It is also known that IL-13 can stimulate an increase in RhoA protein and promote hypercontractiveness via STAT6. Chiba et al.[32] demonstrated that IL-13 can decrease miR-133 expression directly in a STAT6-independent mechanism. Thus, in addition to its direct method of increasing RhoA protein, IL-13 can indirectly increase RhoA by lowering its regulator, miR-133 [33].

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Phenotype and hypertrophy and miR-25

Although the hyperresponsiveness of smooth muscle is an obvious concern, the proliferation and change in phenotype of smooth muscle cells also contribute to the heightened response to stimulus and the production of inflammatory mediators. Kuhn et al.[34] determined how an inflammatory stimulus would affect miRNA expression and in turn how this change in miRNA levels would affect the smooth muscle cell phenotype. They first stimulated airway smooth muscle (ASM) cells with a mixture of IL-1β, TNF-α, and IFN-γ and identified several lowered miRNAs including miR-25. miRNA databases identified several genes targeted by this miRNA including vitronectin receptor integrin aV, myosin 1B, myocyte enhancer factor 2D, Kruppel-like factor 4 (KLF4), and suppressor of cytokine signaling 5. Stimulated ASM cells given antimiR-25 had a comparative decrease in many cytokines including RANTES, IL-18, and eotaxin, as well as myosin heavy chain (MYH11), which is an essential protein in muscle contraction. Nevertheless, no predicted binding sites exist for miR-25 in the MYH11 transcript, and the explanation that KLF4 is the mediator of these effects may be flawed in that both miR-25 and KLF4 are decreased upon cytokine stimulation. Therefore, although miR-25 could certainly be important in asthma, its role requires further elucidation.

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microRNA and genetics

HLA-G had been discovered to be an ‘asthma gene’, that is, a gene in which single-nucleotide polymorphisms (SNPs) predispose an individual to have asthma. HLA-G is produced by fetal cells at the maternal–fetal boundary and helps to produce maternal tolerance of the fetus by enhancing TH2 immunity. Maternal asthma is currently the greatest risk factor for asthma in children, and HLA-G would be a logical source of this predisposition as it is highly expressed when and where the fetus is in direct contact with the mother. In essence, it is during this time that the fetus experiences its first immune exposure. Tan et al.[35] focused on how SNPs in HLA-G could impact on miRNA targeting. They found that three miRNAs were predicted to target HLA-G: miR-148a, miR-148b, and miR-152. In the MRE for all of these miRNAs, there is a SNP associated with asthma: +3142C/G. Binding of these miRNAs to the HLA-G mRNA occurs with a G/G genotype, but with a C/C genotype this binding is less stable. Thus, a loss of miRNA regulation because of an alteration of the MRE in the HLA-G gene and an overexpression of HLA-G protein could provide a mechanism for its association with asthma. This is further supported by HLA-G's role in TH2 immunity as asthma is defined by a TH2 response.

Su et al.[36▪] conducted a study on SNPs in miRNA sequences. Of the four SNPs studied (chosen based on previous work), two appeared to be associated with a decreased risk of asthma: rs2910164G/C and rs2292832C/T. What is interesting is that the rs2910164 SNP exists in the premiRNA sequence of miR-146, the negative regulator of the TLR4 pathway that targets TRAF6 and IRAK1. This SNP is located in the stem loop of the premiR, potentially leading to a change or loss of premiR-146 processing or miR-146 function. Jimenez-Morales et al.[37] recently provided evidence that rs2910164 may play a role in the susceptibility to childhood-onset asthma by demonstrating a difference between asthmatic and control women wherein the C allele was significantly associated with protection to asthma.

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CONCLUSION

Although knowledge of the role of miRNAs in asthma is still in its infancy, several miRNAs have been identified that could promote or relegate the progression of asthma. PremiR medicines based on let-7 and miR-146 have the potential to correct the overexuberant IL-13 and proinflammatory cytokine expression, evident in the asthmatic lung, whereas those based on miR-133 could potentially repair the hyperresponsive defect in BSM cells. Conversely by inhibiting expression of various miRs (miR-21, miR-106a, miR-126, miR-145, miR-155, and miR-221) using antimiR approaches, aberrant cytokine expression and inflammation may be controlled. As with all miR-based medicines, the efficacy and specificity of the chosen miRs/antimiRs, their ability to be effectively delivered to the airways, and their chronicity once they reach their intended location are all aspects for development.

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Acknowledgements

The authors would like to thank Paul McKiernan and Gillian Lavelle for assisting in the editing of this review.

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Conflicts of interest

There are no conflicts of interest.

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REFERENCES AND RECOMMENDED READING

Papers of particular interest, published within the annual period of review, have been highlighted as:

▪ of special interest

▪▪ of outstanding interest

Additional references related to this topic can also be found in the Current World Literature section in this issue (p. 89).

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These findings on let-7 and IL-13 elegantly showed that members of the let-7 family are negative regulators of IL-13 rather than inducers, as was previously thought.

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This work demonstrates that the effect of current treatment of inflammation (glucocorticoids) is by way of their impact on miRNA. Further insights into glucocorticoid impact on miRNAs (particularly in an asthmatic model) might lead to improved therapies.

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This study was able to combine the role of miRNA and genetics in asthma and provided a new indication that miRNAs are essential regulators of cell processes. Its results call for further investigation into the functionality of miR-146 with SNPs and other possible SNPs in miRNAs involved in asthmatic disease.

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Keywords:

asthma; microRNA; therapeutics

© 2013 Lippincott Williams & Wilkins, Inc.